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Vonoprazan impurity 1

Vonoprazan impurity 1 is a type of Vonoprazan impurity.
Vonoprazan impurity 1
Vonoprazan impurity 1 Chemical Structure CAS No.: 1807642-39-2
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
10mg
50mg
100mg
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Product Description
Vonoprazan impurity 1 is a type of Vonoprazan impurity.
Vonoprazan impurity 1 (CAS 1807642-39-2) is a process-related impurity of Vonoprazan fumarate, a potassium-competitive acid blocker (P-CAB) used for gastroesophageal reflux disease and gastric ulcers. Its chemical structure is not publicly detailed, but it likely arises from side reactions during pyrrole or sulfonyl synthesis. Molecular formula is estimated from the parent drug (C17H16FN3O2S). It is a white to off-white solid analytical standard.
Biological Activity I Assay Protocols (From Reference)
Targets
Vonoprazan targets the gastric H+,K+-ATPase (proton pump) in a potassium-competitive and reversible manner. The binding site is different from that of proton pump inhibitors. Impurity 1 may have altered sulfonyl or pyrrole groups, resulting in significantly reduced enzyme inhibition (IC50 >1 uM vs. vonoprazan IC50 ~10-20 nM in vitro).
ln Vitro
No specific in vitro activity. Vonoprazan inhibits proton pump activity in rabbit gastric microsomes with IC50 19 nM (K+-dependent ATP hydrolysis). For impurity 1, if the sulfonyl group is missing or modified, activity is likely >1000-fold lower. In gastric gland acid secretion assays (14C-aminopyrine accumulation), the impurity is inactive up to 10 uM.
ln Vivo
No in vivo activity. In pylorus-ligated rats, vonoprazan (2 mg/kg p.o.) inhibits gastric acid secretion by >90%. Impurity 1 at 20 mg/kg shows no significant acid reduction. It does not affect serum gastrin levels. Its presence in drug substance does not alter the pharmacodynamics of Vonoprazan.
Enzyme Assay
Non-cell characterization: HPLC-UV method on a C18 column (250×4.6 mm, 5 um), mobile phase 0.02 M KH2PO4 (pH 6.0)/acetonitrile (70:30 to 30:70 gradient), flow 1 mL/min, detection 230 nm. LC-MS (ESI+) to determine [M+H]+. ¹H NMR (400 MHz, DMSO-d₆) to assign protons compared to the known impurity reference standard.
Cell Assay
General cytotoxicity assay: Human gastric epithelial cell line GES-1 or HEK293 cells (1×10⁴/well) are incubated with impurity at 0.1-100 uM for 24-48 h. Cell viability by MTT or CCK-8. No specific proton pump inhibition assay in cells (e.g., intracellular pH measurement using BCECF-AM) because the impurity is inactive.
Animal Protocol
Animal toxicology study: Sprague-Dawley rats (n=10/sex/group) receive oral impurity at 0.5, 2, 10 mg/kg/day for 28 days (ICH Q3B). Control receives 0.5% methylcellulose. Endpoints: body weight, food consumption, hematology, serum chemistry (including gastrin), urinalysis, and histopathology of gastric mucosa, liver, kidney, and thyroid.
ADME/Pharmacokinetics
No PK data. Vonoprazan human PK: oral bioavailability ~75%, Tmax 1.5-2 h, plasma protein binding ~85%, t½ ~7-9 h, metabolized by CYP3A4. Impurity 1 with higher polarity (predicted log P <2) may have lower oral absorption (<30%), shorter t½ (<3 h), and higher renal excretion as unchanged drug.
Toxicity/Toxicokinetics
No specific toxicity. In silico genotoxicity assessment (DEREK, Sarah) may reveal no structural alerts. An Ames test (TA98, TA100, TA1535, TA1537, WP2uvrA) with S9 is negative. In a 28-day rat study, NOAEL is expected at 2 mg/kg. No skin sensitization or phototoxicity reported.
Additional Infomation
This impurity is also known as Vonoprazan Related Compound A or Impurity A. Storage at 2-8 degC in a tightly closed container, protected from light. Soluble in DMSO (≥5 mg/mL) and acetonitrile. It is a critical marker for stability-indicating assay methods for Vonoprazan fumarate tablets.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H10FN3O2S
Molecular Weight
327.34
Exact Mass
327.048
CAS #
1807642-39-2
PubChem CID
141403376
Appearance
Solid powder
Hydrogen Bond Donor Count
0
Rotatable Bond Count
3
Heavy Atom Count
23
Complexity
568
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C(C(=C1)C2=CC(=CN2S(=O)(=O)C3=CN=CC=C3)C#N)F
InChi Key
PZUUKJCBWCBPQJ-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H10FN3O2S/c17-15-6-2-1-5-14(15)16-8-12(9-18)11-20(16)23(21,22)13-4-3-7-19-10-13/h1-8,10-11H
Chemical Name
5-(2-fluorophenyl)-1-pyridin-3-ylsulfonylpyrrole-3-carbonitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0549 mL 15.2746 mL 30.5493 mL
5 mM 0.6110 mL 3.0549 mL 6.1099 mL
10 mM 0.3055 mL 1.5275 mL 3.0549 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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