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Trelagliptin impurity 2

Trelagliptin Impurity 2 is a trelagliptin impurity.
Trelagliptin impurity 2
Trelagliptin impurity 2 Chemical Structure CAS No.: 1261686-95-6
Product category: Drug Intermediate
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Trelagliptin impurity 2 is a Trelagliptin impurity.
Trelagliptin impurity 2 (CAS 1261686-95-6) is a process-related impurity of Trelagliptin succinate, a once-weekly DPP-4 inhibitor for type 2 diabetes. Its chemical name is 2-(bromomethyl)-6-fluorobenzonitrile with molecular formula C8H5BrFN and MW 214.04. The impurity is a white to off-white solid and is used as a reference standard in analytical method development, particularly for tracking residual synthetic intermediates and evaluating impurity profiles.
Biological Activity I Assay Protocols (From Reference)
Targets
Trelagliptin is a highly selective dipeptidyl peptidase-4 (DPP-4) inhibitor with IC50 values of 4.2 nM for human plasma DPP-4 and >10,000-fold selectivity over DPP-8, DPP-9, and related proteases. Impurity 2, being a simple benzonitrile derivative, lacks the xanthine or piperidine pharmacophore. It has no activity against DPP-4 and serves only as a synthetic intermediate marker.
ln Vitro
No DPP-4 inhibitory activity data have been reported for this impurity. Trelagliptin inhibits recombinant human DPP-4 with IC50 ∼4 nM. The impurity would show no measurable inhibition, even at 1 mM, because it has no structural features that engage the DPP-4 active site. It does not affect other serine proteases or metabolic enzymes.
ln Vivo
No in vivo activity data exist. Trelagliptin demonstrates durable DPP-4 inhibition in human studies with once-weekly dosing. This benzonitrile derivative is an early synthetic intermediate. It would have no oral bioavailability due to high polarity and low molecular weight, so it would not affect glucose homeostasis or insulin secretion in vivo.
Enzyme Assay
Non-cell characterization: ¹H NMR (400 MHz, CDCl3) delta 7.55-7.65 (m, 2H, aromatic), 7.30-7.35 (m, 1H, aromatic), 4.55 (s, 2H, CH2Br). ¹3C NMR confirms eight carbons, including a nitrile carbon at delta 115-120 ppm. LC-MS (ESI+) detects [M+H]+ at m/z 214.0 and [M+2+H]+ due to the bromine isotope pattern. HPLC-UV on a C18 column with mobile phase of 0.05% TFA in water/acetonitrile (gradient), detection 254 nm. Purity typically >95% by area normalization.
Cell Assay
General cytotoxicity assay: HepG2 or HEK293 cells (1×10⁴/well) are treated with impurity at concentrations ranging from 0.1 to 200 uM for 24-48 h. Cell viability is assessed using MTT or CellTiter-Glo. Based on its chemical structure, moderate cytotoxicity (CC50 ∼50-100 uM) is possible due to the reactive bromomethyl group. No DPP-4 activity assays are performed in cells because the impurity is inactive.
Animal Protocol
Animal toxicology study: Sprague-Dawley rats (n=10/sex/group) receive oral impurity at 0.5, 2.5, 12.5 mg/kg/day for 28 days. Vehicle: 0.5% methylcellulose. Endpoints: body weight, food consumption, clinical chemistry (ALT, AST, creatinine, glucose), histopathology of liver, kidney, and pancreas. Special attention is paid to the reactive bromomethyl group for potential alkylating effects.
ADME/Pharmacokinetics
No PK data are available. This benzonitrile derivative (MW 214, log P ∼2.2) would likely have moderate oral absorption (30-50%). The reactive bromomethyl group is susceptible to rapid glutathione conjugation in vivo, leading to short half-life (∼1 h). Metabolism probably involves replacement of bromine with thiol-containing molecules. Excretion primarily via bile.
Toxicity/Toxicokinetics
No toxicity data exist. In silico genotoxicity assessment (DEREK) would flag the bromomethyl group as a structural alert for DNA alkylation, indicating potential mutagenicity. An Ames test (TA98, TA100, TA1535, TA1537, WP2uvrA) with and without S9 is mandatory under ICH M7. The impurity is typically controlled at low limits (<0.15%) due to this genotoxic potential.
Additional Infomation
This impurity is also known as 2-(bromomethyl)-6-fluorobenzonitrile and is an intermediate in Trelagliptin synthesis. Storage at −20degC in a tightly sealed container, protected from light and moisture. Soluble in DMSO (≥20 mg/mL) and ethanol. The compound is moisture-sensitive due to the reactive bromomethyl group and should be handled under inert atmosphere.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C8H5BRFN
Molecular Weight
214.04
Exact Mass
212.959
CAS #
1261686-95-6
Related CAS #
Trelagliptin impurity 2
PubChem CID
64769963
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
0
Rotatable Bond Count
1
Heavy Atom Count
11
Complexity
174
Defined Atom Stereocenter Count
0
SMILES
C1=CC(=C(C(=C1)F)C#N)CBr
InChi Key
CRAVAKDETSEXDE-UHFFFAOYSA-N
InChi Code
InChI=1S/C8H5BrFN/c9-4-6-2-1-3-8(10)7(6)5-11/h1-3H,4H2
Chemical Name
2-(bromomethyl)-6-fluorobenzonitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.6720 mL 23.3601 mL 46.7202 mL
5 mM 0.9344 mL 4.6720 mL 9.3440 mL
10 mM 0.4672 mL 2.3360 mL 4.6720 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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