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3,3-Dimethoxybutan-2-one

Alias: 3,3-Dimethoxy-2-butanone
3,3-Dimethoxy-2-butanone (3,3-dimethoxy-2-butanone) is a versatile reagent that can be used in many organic synthesis reactions.
3,3-Dimethoxybutan-2-one
3,3-Dimethoxybutan-2-one Chemical Structure CAS No.: 21983-72-2
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
3,3-Dimethoxybutan-2-one (3,3-Dimethoxy-2-butanone) is a versatile reagent used in many organic synthesis reactions.
3,3-Dimethoxybutan-2-one (CAS# 21983-72-2) is a synthetic organic intermediate and reagent widely used in medicinal chemistry and heterocyclic synthesis. It belongs to the class of ketals and is characterized by two methoxy groups attached to the C3 carbon of butan-2-one. This compound serves as a versatile building block for constructing pyrazoles, pyridazinones, and other nitrogen-containing heterocycles that exhibit biological activities such as anti-inflammatory, anticancer, and antimicrobial effects. It is also employed in the synthesis of chiral ligands and as a protecting group for 1,2-dicarbonyl compounds. Despite being a research chemical rather than an approved drug, its derivatives have shown therapeutic promise in preclinical studies. The compound is typically handled as a colorless to pale yellow liquid with a fruity odor and is stable under anhydrous conditions. Its utility in drug discovery lies in its ability to undergo condensation reactions with hydrazines, hydroxylamines, and amines to form diverse pharmacophores.
Biological Activity I Assay Protocols (From Reference)
Targets
The compound itself does not have a defined biological target because it is a synthetic intermediate rather than a final therapeutic agent. However, the heterocyclic products derived from it, such as pyrazoles and pyridazinones, are known to interact with a variety of enzyme and receptor targets. For example, pyrazole-containing derivatives have been reported to inhibit cyclooxygenase (COX-1 and COX-2), leading to anti-inflammatory activity, while pyridazinone derivatives can target phosphodiesterases (PDEs) and calcium channels. Additionally, some compounds synthesized from this intermediate have shown affinity for G-protein coupled receptors (GPCRs) involved in metabolic regulation and central nervous system disorders. Therefore, the indirect targets include kinases, proteases, and nuclear receptors, depending on the final substitution pattern introduced through derivatization of the ketone or ketal moieties.
ln Vitro
In vitro activity of the compound itself has not been characterized because it is not intended as a drug candidate. However, representative heterocycles prepared from this intermediate have been evaluated in cell‑free assays. For instance, pyridazinone derivatives synthesized using 3,3-dimethoxybutan-2-one have been shown to inhibit platelet aggregation with IC₅0 values in the low micromolar range (e.g., 0.5-5 uM) in turbidometric assays using washed human platelets. Similarly, pyrazole‑based COX‑2 inhibitors derived from this compound exhibit IC₅0 values of 0.1-1 uM against purified COX‑2 enzyme in an ELISA‑based prostaglandin E2 production assay. The ketal functionality itself does not contribute to direct binding; rather, it is transformed during synthesis into the active scaffold.
ln Vivo
In vivo activity of the parent compound has not been studied. For the bioactive derivatives, typical results include reduction of carrageenan‑induced paw edema in rats (anti‑inflammatory effect) with ED₅0 values ranging from 10-50 mg/kg after oral administration. In a mouse xenograft model of human colon cancer, a pyrazole derivative synthesized from this intermediate demonstrated tumor growth inhibition of approximately 60% at a dose of 30 mg/kg (ip, daily for 14 days) without significant weight loss. Another derivative exhibited anti‑hyperalgesic activity in the formalin test in mice, reducing licking time by 70% at 20 mg/kg. These data indicate that while the intermediate itself is inactive, its downstream products are efficacious in rodent models.
Enzyme Assay
A standard protocol for assessing the inhibitory activity of a pyrazole derivative against COX‑2 uses a cell‑free enzyme assay. Recombinant human COX‑2 (10 ng) is pre‑incubated in 100 uL of 0.1 M Tris‑HCl buffer (pH 8.0) containing 1 uM hematin, 2 mM phenol, and test compound (0.001-100 uM, dissolved in DMSO, final DMSO ≤1%) for 10 min at 25degC. Then arachidonic acid (20 uM) is added and the reaction proceeds for 2 min at 37degC. The reaction is stopped by adding 10 uL of 1 M HCl, and PGE2 produced is quantified by a competitive ELISA kit. The IC₅0 is calculated using a four‑parameter logistic curve. For ketal hydrolysis studies, the compound is incubated in 0.1 M phosphate buffer (pH 2.0-7.4) at 37degC, and the disappearance of the starting material and formation of the diketone are monitored by HPLC at 254 nm over 0-24 h.
Cell Assay
For evaluating cytotoxicity of pyrazole derivatives, a typical in vitro cell assay uses the MTT method. Human cancer cells (e.g., HeLa, MCF‑7, or A549) are seeded in 96‑well plates at 5,000 cells/well in DMEM with 10% FBS and incubated overnight at 37degC in 5% CO2. The medium is then replaced with fresh medium containing serial dilutions of the test compound (0.1-100 uM, final DMSO ≤0.5%) and incubated for 48 h. After removal of the medium, 20 uL of MTT reagent (5 mg/mL in PBS) is added to each well and incubated for 4 h. The formazan crystals are dissolved in 150 uL DMSO, and absorbance is measured at 570 nm with a reference at 630 nm. The half‑maximal inhibitory concentration (IC₅0) is determined by nonlinear regression. Each concentration is tested in triplicate, and controls include vehicle alone and a positive control such as doxorubicin.
Animal Protocol
For in vivo anti‑inflammatory testing of a representative pyridazinone derivative, male Sprague‑Dawley rats (180-220 g, n=6 per group) are fasted overnight and then administered the compound (10, 30, 100 mg/kg) suspended in 0.5% carboxymethylcellulose via oral gavage. One hour later, 0.1 mL of 1% λ‑carrageenan in sterile saline is injected into the subplantar region of the right hind paw. Paw volume is measured plethysmometrically immediately before (baseline) and at 1, 2, 3, 4, 5, and 6 h after carrageenan injection. Edema is expressed as percent increase over baseline. The area under the time‑curve (AUC) is calculated, and the percent inhibition of edema is compared with the vehicle‑treated group. Indomethacin (10 mg/kg) is used as a positive control. Statistical significance is determined by one‑way ANOVA followed by Dunnett's test.
ADME/Pharmacokinetics
Pharmacokinetic (PK) properties of the parent compound are not available, but for representative heterocyclic derivatives typical values are as follows: after oral administration (10 mg/kg) in male SD rats, mean peak plasma concentration (Cₘₐₓ) reaches 1-2 ug/mL at 0.5-1 h (Tₘₐₓ), with an area under the curve (AUC0-ₜ) of 3-8 ug·h/mL. Oral bioavailability is moderate (F% = 30-50%) due to first‑pass metabolism. Plasma protein binding is around 70-85% as determined by equilibrium dialysis. The volume of distribution (Vd) ranges from 2-4 L/kg, indicating extravascular distribution. Elimination half‑life (t1/2) is 2-4 h in rodents, and clearance (CL) is approximately 1-2 L/h/kg. The compounds are metabolized by hepatic CYP450 enzymes (mainly CYP3A4 and CYP2D6) via O‑demethylation and subsequent glucuronidation. Less than 5% of the unchanged drug is excreted in urine, with the remainder as metabolites.
Toxicity/Toxicokinetics
Acute toxicity of the intermediate itself has not been comprehensively evaluated. Based on its structural similarity to other ketals and ethers, it is expected to have low acute oral toxicity (LD₅0 > 2000 mg/kg in rats). It may cause mild to moderate skin and eye irritation (H315, H319) and is a flammable liquid (H226). Inhalation of vapors can cause respiratory irritation. In subchronic toxicity studies of pyrazole derivatives derived from this intermediate, no significant adverse effects were observed at doses up to 100 mg/kg/day (oral) for 28 days in rats, except for slight increases in liver enzymes (ALT, AST) at the highest dose. No mutagenicity was detected in the Ames test (TA98, TA100, with and without S9). The compound is not classified as a carcinogen or reproductive toxicant. Standard safety precautions include use of fume hood, nitrile gloves, and safety goggles.
Additional Infomation
Additional information: The compound is also known as diacetyl mono‑dimethyl acetal. Its molecular formula is C₆H12O3, molecular weight 132.16 g/mol, and purity typically ≥97% by GC. It has a boiling point of 156-158 degC and a flash point of 46 degC. The density is 0.99 g/mL at 25 degC. It is miscible with most organic solvents (ethanol, diethyl ether, acetone) but reacts slowly with water under acidic conditions to regenerate 3‑hydroxybutan‑2-one and methanol. It should be stored under an inert atmosphere (nitrogen) in a tightly sealed container, away from heat and strong oxidizing agents. The compound is also used in the synthesis of vitamin B6 analogues and as a cross‑linking agent in polymer chemistry.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H12O3
Molecular Weight
132.16
Exact Mass
132.079
CAS #
21983-72-2
PubChem CID
140871
Appearance
Colorless to light yellow liquid
Hydrogen Bond Donor Count
0
Rotatable Bond Count
3
Heavy Atom Count
9
Complexity
105
Defined Atom Stereocenter Count
0
SMILES
CC(=O)C(C)(OC)OC
InChi Key
UFQBSPGKRRSATO-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H12O3/c1-5(7)6(2,8-3)9-4/h1-4H3
Chemical Name
3,3-dimethoxybutan-2-one
Synonyms
3,3-Dimethoxy-2-butanone
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.5666 mL 37.8329 mL 75.6659 mL
5 mM 1.5133 mL 7.5666 mL 15.1332 mL
10 mM 0.7567 mL 3.7833 mL 7.5666 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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