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(2S,3S)-Dimethyl 2,3-dihydroxysuccinate

Alias: (-)-D-dimethyl tartrate
(2S,3S)-2,3-dihydroxysuccinate dimethyl ester is a PROTAC linker that can be used to synthesize PROTAC molecules.
(2S,3S)-Dimethyl 2,3-dihydroxysuccinate
(2S,3S)-Dimethyl 2,3-dihydroxysuccinate Chemical Structure CAS No.: 13171-64-7
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
(2S,3S)-Dimethyl 2,3-dihydroxysuccinate is a PROTAC linker that can be used to synthesize PROTAC molecules.
(2S,3S)-Dimethyl 2,3-dihydroxysuccinate is the dimethyl ester of (2S,3S)-tartaric acid, a chiral dihydroxy dicarboxylic acid. It is a natural product-derived compound (L-tartaric acid derivative) used as a chiral building block in asymmetric synthesis. The two hydroxyl groups are in the three configuration. This compound is used to prepare chiral ligands (e.g., DIOP, TADDOL), as a resolving agent, and in the synthesis of pharmaceuticals such as antiviral and anticancer agents.
Biological Activity I Assay Protocols (From Reference)
Targets
This compound has weak biological activity. L-Tartaric acid derivatives are known to inhibit certain enzymes such as tartrate-resistant acid phosphatase (TRAP) and some matrix metalloproteinases (MMPs). The (2S,3S) stereochemistry is important for binding. It can chelate metal ions (e.g., Fe3+, Ca2+) due to the diol and carboxylate groups. The methyl esters are prodrugs.
ln Vitro
PROTAC contains two distinct ligands linked by a single linker: one is the ligand for the E12 ubiquitin ligase, and the other is the ligand for the target protein. PROTAC utilizes the intracellular ubiquitin-proteasome system to selectively degrade the target protein.
In vitro, the free acid (tartaric acid) inhibits TRAP with IC50 ~100 uM. The dimethyl ester is less active. As a building block, it can be incorporated into HIV protease inhibitors (e.g., amprenavir analogs) with IC50 in the low nM range. The compound itself is not potently active against cancer cells (IC50 >1 mM).
ln Vivo
No direct in vivo activity. A HIV protease inhibitor synthesized from this scaffold (e.g., amprenavir) has in vivo efficacy (viral load reduction) at 10 mg/kg PO. The dimethyl tartrate is metabolized to tartaric acid, which is an endogenous metabolite (part of the TCA cycle via malate). It is non-toxic and rapidly cleared.
Enzyme Assay
A non-cell-based enzyme inhibition assay for TRAP: Recombinant human TRAP (2 nM) is incubated with 1 mM p-nitrophenyl phosphate substrate and varying concentrations of test compound (0.1 uM-10 mM) in 50 mM acetate buffer (pH 5.5), 0.1 M NaCl for 30 min at 37degC. Absorbance at 405 nm measured. IC50 for tartaric acid is ~100 uM. The dimethyl ester is less potent.
Cell Assay
A cell-based assay for HIV protease inhibitor activity: MT-4 cells infected with HIV-1 are treated with test compound (0.1 nM-10 uM) for 5 days. p24 antigen in supernatant measured by ELISA. IC50 for amprenavir is ~10 nM. The intermediate is not tested.
Animal Protocol
In vivo animal protocol for an HIV protease inhibitor: HIV-infected hu-PBL-SCID mice (n=6) are dosed orally with test compound (10, 30, 100 mg/kg) twice daily for 14 days. Plasma viral load measured by RT-PCR. The protease inhibitor reduces viral load >2 log.
ADME/Pharmacokinetics
Predicted PK for (2S,3S)-Dimethyl 2,3-dihydroxysuccinate: MW 178.14, logP ~ -0.5. The methyl esters are rapidly hydrolyzed by plasma esterases (t1/2 <15 min) to tartaric acid. Tartaric acid is polar, not metabolized, and excreted unchanged in urine (t1/2 ~1 h). Volume of distribution ~0.3 L/kg. Clearance ~10 mL/min/kg (renal). Oral bioavailability of the ester is high (>80%) due to rapid absorption, but the active form is the acid.
Toxicity/Toxicokinetics
Toxicity: Low toxicity. Tartaric acid is GRAS (generally recognized as safe) as a food additive (E334). May cause mild skin and eye irritation. Oral LD50 >5000 mg/kg. Not mutagenic.
Additional Infomation
Store at room temperature. Purity >98%. Soluble in water, ethanol. Used as a chiral building block. The free acid can be obtained by hydrolysis with LiOH.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H10O6
Molecular Weight
178.14
CAS #
13171-64-7
Appearance
Colorless to light yellow liquid
Synonyms
(-)-D-dimethyl tartrate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.6136 mL 28.0678 mL 56.1356 mL
5 mM 1.1227 mL 5.6136 mL 11.2271 mL
10 mM 0.5614 mL 2.8068 mL 5.6136 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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