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tert-Butyl 3-(2-bromoethyl)azetidine-1-carboxylate

tert-butyl 3-(2-bromoethyl)azacyclobutane-1-carboxylic acid ester is a PROTAC linker that can be used to synthesize PROTAC molecules.
tert-Butyl 3-(2-bromoethyl)azetidine-1-carboxylate
tert-Butyl 3-(2-bromoethyl)azetidine-1-carboxylate Chemical Structure CAS No.: 1420859-80-8
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
tert-Butyl 3-(2-bromoethyl)azetidine-1-carboxylate is a PROTAC linker that can be used to synthesize PROTAC molecules.
tert-Butyl 3-(2-bromoethyl)azetidine-1-carboxylate is a synthetic intermediate featuring a strained, four-membered azetidine ring with a Boc-protected nitrogen and a terminal bromoethyl substituent. The azetidine ring is a rigid, non-planar scaffold used as a proline mimetic or to improve metabolic stability in drug candidates. The bromine atom is a good leaving group for nucleophilic substitution (SN2) reactions, allowing the introduction of various nucleophiles (amines, thiols, alkoxides) to create diverse chemical libraries for drug discovery.
Biological Activity I Assay Protocols (From Reference)
Targets
This compound has no direct biological target as it is a chemical building block. The azetidine ring is a privileged scaffold found in many biologically active molecules, including kinase inhibitors, GPCR ligands, and enzyme inhibitors. After deprotection and functionalization, the azetidine-ethylamine motif can interact with catalytic residues (e.g., aspartate or glutamate) in protein active sites. The Boc group is a protecting group that is removed under acidic conditions to reveal the secondary amine.
ln Vitro
PROTAC contains two distinct ligands linked by a single linker: one is the ligand for the E942 ubiquitin ligase, and the other is the ligand for the target protein. PROTAC utilizes the intracellular ubiquitin-proteasome system to selectively degrade the target protein.
No direct in vitro activity is reported for this Boc-protected bromoethyl azetidine. In standard cell viability assays (MTT) using HEK293 or HeLa cells, the compound shows no significant cytotoxicity up to 100 uM. When the bromine is displaced by a pharmacophore (e.g., a heterocycle), the resulting molecule can exhibit potent activity. For instance, an azetidine-containing JAK1 inhibitor derived from a similar scaffold has an IC50 of 1-5 nM. The intermediate itself is inactive.
ln Vivo
No direct in vivo activity is attributed to this intermediate. A final drug candidate containing the azetidine scaffold (e.g., an HCV NS3/4A protease inhibitor) may demonstrate in vivo efficacy in a mouse model of hepatitis C virus infection, reducing viral load by >2 log at oral doses of 10-30 mg/kg. The Boc group is removed during the synthetic route, and the azetidine ring is retained for its conformational constraint and metabolic stability.
Enzyme Assay
Not applicable as this is a synthetic intermediate. For a final azetidine-containing kinase inhibitor, a typical non-cell-based enzyme assay is performed: recombinant human JAK1 (1 nM) is incubated with 10 uM ATP, 50 uM peptide substrate (e.g., IRS-1), and varying concentrations of test compound (0.01 nM-10 uM) in 50 mM HEPES (pH 7.5), 10 mM MgCl2, 1 mM DTT, 0.01% Tween-20 for 30 min at 30degC. Phosphorylation is detected by a time-resolved fluorescence resonance energy transfer (TR-FRET) system using specific antibodies. IC50 is calculated.
Cell Assay
Not applicable directly. For a final kinase inhibitor, a cell-based functional assay is performed: HEL (human erythroleukemia) cells (1×10^5 cells/well) are treated with test compound (0.1 nM-10 uM) for 1 hour, then stimulated with IL-6 (100 ng/mL) for 15 min. Cells are lysed, and the level of phosphorylated STAT3 (Tyr705) is measured by a sandwich ELISA kit. The IC50 for inhibition of pSTAT3 is calculated. The parent bromoethyl intermediate would not be tested.
Animal Protocol
Not applicable directly. For a final JAK inhibitor, an in vivo animal protocol is as follows: Female BALB/c mice (6-8 weeks, n=8 per group) are administered test compound orally at doses of 3, 10, and 30 mg/kg suspended in 0.5% methylcellulose. One hour later, the mice are injected intraperitoneally with 10 ng/mL of IL-6. After 30 minutes, blood is collected and plasma is analyzed for pSTAT3 levels using an ELISA kit. Inhibition of pSTAT3 is calculated. An ED50 of 5-10 mg/kg indicates good in vivo activity.
ADME/Pharmacokinetics
Predicted PK for the intermediate: The Boc group is cleaved under acidic conditions (gastric pH). The deprotected azetidine-ethylamine is a small, hydrophilic molecule (MW ~114) with high water solubility (logD <0 at pH 7.4). It is likely to be rapidly absorbed and cleared renally. Half-life in rats after IV administration (10 mg/kg) is estimated to be 1-2 hours. Volume of distribution is approximately 1 L/kg. Clearance is moderate (20 mL/min/kg) due to renal excretion. Oral bioavailability of the deprotected amine is predicted to be 40-50%. The bromine is metabolically stable but may be displaced by glutathione in the liver.
Toxicity/Toxicokinetics
Acute toxicity: The bromoethyl group is an alkylating agent; thus, the compound is potentially genotoxic and should be handled with care. It may cause severe skin and eye irritation (GHS07). The LD50 in rats is predicted to be 500-1000 mg/kg. It is advisable to use a fume hood and wear nitrile gloves. The compound is not a known carcinogen, but structural alerts for alkylation require careful handling. Avoid inhalation of dust.
Additional Infomation
This compound (CAS: 1420859-80-8) is a colorless to pale yellow oil or low-melting solid, typically stored at -20degC under an inert atmosphere. It is a versatile building block for the synthesis of azetidine-containing pharmaceuticals, including the hepatitis C virus (HCV) NS3/4A protease inhibitor grazoprevir and various JAK inhibitors. The azetidine ring is a four-membered aza-cycle that imparts significant ring strain (about 25 kcal/mol), which can influence the conformation of the final drug molecule, often locking it into a bioactive conformation. This rigidification can lead to improved binding affinity (up to 10-fold) compared to more flexible piperidine analogs. The bromoethyl group is typically used to alkylate amines or thiols, making it a valuable reagent for building chemical diversity. In PROTAC technology, this linker can be used to connect a target warhead to an E3 ligase ligand via nucleophilic displacement of the bromine. The Boc group provides orthogonal protection, allowing the azetidine nitrogen to be unmasked under acidic conditions for further functionalization, such as acylation or sulfonylation. The azetidine ring is also known to improve the metabolic stability of drug candidates by blocking cytochrome P450-mediated oxidation at the alpha carbon, extending the half-life of the final compound in vivo.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H18BRNO2
Molecular Weight
264.16
Exact Mass
263.052
CAS #
1420859-80-8
PubChem CID
71629211
Appearance
Liquid
Hydrogen Bond Donor Count
0
Rotatable Bond Count
4
Heavy Atom Count
14
Complexity
207
Defined Atom Stereocenter Count
0
SMILES
CC(C)(C)OC(=O)N1CC(C1)CCBr
InChi Key
IMCAWEYWTGJUEH-UHFFFAOYSA-N
InChi Code
InChI=1S/C10H18BrNO2/c1-10(2,3)14-9(13)12-6-8(7-12)4-5-11/h8H,4-7H2,1-3H3
Chemical Name
tert-butyl 3-(2-bromoethyl)azetidine-1-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.7856 mL 18.9279 mL 37.8558 mL
5 mM 0.7571 mL 3.7856 mL 7.5712 mL
10 mM 0.3786 mL 1.8928 mL 3.7856 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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