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(S)-Methyl 2-oxooxazolidine-4-carboxylate

Cat No.:V107883 Purity: ≥98%
4-Oxazolidinecarboxylic acid, 2-oxo-, methyl ester, (S)- is a biomolecule.
(S)-Methyl 2-oxooxazolidine-4-carboxylate
(S)-Methyl 2-oxooxazolidine-4-carboxylate Chemical Structure CAS No.: 132682-22-5
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes
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Product Description
4-Oxazolidinecarboxylic acid, 2-oxo-, methyl ester, (S)- is a biomolecule.
(S)-Methyl 2-oxooxazolidine-4-carboxylate (CAS#: 132682-22-5) is a chiral heterocyclic compound belonging to the oxazolidinone family. This methyl ester derivative features a five-membered ring containing nitrogen and oxygen with a carbonyl group at the 2-position. The compound is a valuable building block in asymmetric organic synthesis, particularly for the preparation of chiral amines and amino alcohols. It is also a precursor to oxazolidinone-based antibiotics. In medicinal chemistry, it serves as a versatile intermediate for constructing complex pharmaceutical scaffolds.
Biological Activity I Assay Protocols (From Reference)
Targets
The compound itself does not have a specific biological target. However, oxazolidinone derivatives are a well-established class of antibacterial agents that target the bacterial 50S ribosomal subunit. They inhibit protein synthesis by binding to the peptidyl transferase center, preventing the formation of the initiation complex. Examples include linezolid and tedizolid. (S)-Methyl 2-oxooxazolidine-4-carboxylate is a synthetic precursor that can be elaborated into such active antibacterial compounds through further chemical transformations.
ln Vitro
The parent compound is not directly tested for antibacterial activity; rather, its derivatives are. Oxazolidinone antibiotics derived from such intermediates exhibit potent in vitro activity against Gram-positive pathogens, including methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant Enterococci (VRE), and multidrug-resistant Streptococcus pneumoniae. Minimum inhibitory concentration (MIC) values for clinically used oxazolidinones like linezolid are typically 1-4 microg/mL against susceptible strains. These compounds inhibit protein synthesis by binding to the 23S rRNA of the 50S ribosomal subunit.
ln Vivo
No specific in vivo activity data for the parent compound (S)-Methyl 2-oxooxazolidine-4-carboxylate is available. However, oxazolidinone antibiotics synthesized from this building block have well-established in vivo activity. For example, linezolid shows excellent bioavailability (>90% oral) and tissue penetration in animal models of infection. In murine thigh infection models, linezolid produces dose-dependent bacterial killing with a pharmacokinetic/pharmacodynamic (PK/PD) index target of AUC/MIC ratio > 80. Tedizolid, a newer oxazolidinone, demonstrates once-daily dosing and enhanced potency in animal models.
Enzyme Assay
Non-cellular assays for measuring the antibacterial activity of oxazolidinone derivatives include ribosomal binding assays. A standard protocol uses purified 50S ribosomal subunits from S. aureus. The test compound is incubated with 50S subunits at 37degC for 10 minutes in binding buffer (20 mM Tris-HCl pH 7.6, 100 mM NH4Cl, 10 mM MgCl2). A radiolabeled probe (e.g., 3H-labeled linezolid) is added, followed by a 30-minute incubation. Unbound compound is removed by rapid filtration through nitrocellulose filters, and bound radioactivity is measured by liquid scintillation counting. Specific binding is determined by subtracting non-specific binding in the presence of an excess of unlabeled compound.
Cell Assay
Cells for testing antibacterial activity include a panel of Gram-positive bacterial strains. A standard broth microdilution assay follows CLSI guidelines M07. Bacterial cultures are grown overnight in Mueller-Hinton broth at 37degC. The cultures are diluted to approximately 5 × 10⁵ CFU/mL. The test compound (S)-Methyl 2-oxooxazolidine-4-carboxylate or its derivatives are serially diluted 2-fold (0.03-64 microg/mL) in 96-well plates. Bacterial suspension (100 microL) is added to each well, and plates are incubated at 37degC for 18-24 hours. MIC is read as the lowest concentration with no visible growth, using a microplate reader at 600 nm or visual inspection.
Animal Protocol
In vivo experiments for oxazolidinone antibiotics typically use a murine model of systemic infection. Female BALB/c mice (6-8 weeks) are inoculated intraperitoneally with a lethal dose of S. aureus (approx. 1 × 10⁷ CFU/mouse) suspended in 5% mucin. Test compound, (S)-Methyl 2-oxooxazolidine-4-carboxylate derivative, is administered orally or intravenously 1 hour post-infection. Doses typically range from 1-50 mg/kg. Survival is monitored for 7 days. For pharmacokinetic/pharmacodynamic studies, neutropenic mouse thigh infection models involve subcutaneous administration every 4-8 hours, with bacterial burden measured by homogenizing and plating thigh tissues.
ADME/Pharmacokinetics
(S)-Methyl 2-oxooxazolidine-4-carboxylate has a molecular weight of 145.11 g/mol and a molecular formula of C₅H₇NO4. It is a white to off-white solid at room temperature. The compound is soluble in organic solvents such as methanol, ethanol, DMSO, and dichloromethane but has limited solubility in water. As an ester, it is susceptible to hydrolysis under basic conditions. It should be stored at -20degC in a tightly sealed container under anhydrous conditions to maintain stability. Chiral purity is typically >99% enantiomeric excess (ee) due to the (S) configuration at the 4-position.
Toxicity/Toxicokinetics
Detailed toxicological data for the parent compound is not publicly available. However, based on its oxazolidinone core structure and ester functional group, it is expected to have moderate acute toxicity. The compound may cause skin and eye irritation upon contact. As an ester, it may be metabolized by plasma esterases to the corresponding carboxylic acid, which may have reduced biological activity. For structurally related oxazolidinones, chronic toxicity includes reversible myelosuppression (thrombocytopenia and anemia) associated with prolonged use. Standard laboratory precautions should be followed during handling.
Additional Infomation
(S)-Methyl 2-oxooxazolidine-4-carboxylate is a key chiral building block used in the pharmaceutical industry for the synthesis of antibacterial agents, particularly oxazolidinone antibiotics. It is not an approved drug and has not undergone clinical trials. The compound enables the introduction of the essential 4-(S)-stereochemistry required for oxazolidinone antibacterial activity. It is used in drug discovery programs for optimizing potency, pharmacokinetics, and safety profiles. Additionally, it serves as a precursor for synthesizing chiral amines, amino alcohols, and other heterocyclic scaffolds for medicinal chemistry.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C5H7NO4
Molecular Weight
145.11
Exact Mass
145.038
CAS #
132682-22-5
PubChem CID
385463
Appearance
Liquid
Density
1.3±0.1 g/cm3
Boiling Point
357.8±31.0 °C at 760 mmHg
Flash Point
170.2±24.8 °C
Vapour Pressure
0.0±0.8 mmHg at 25°C
Index of Refraction
1.456
LogP
-0.32
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
2
Heavy Atom Count
10
Complexity
167
Defined Atom Stereocenter Count
1
SMILES
O=C1OC[C@@H](C(OC)=O)N1
InChi Key
PZIWTVKXOORXAZ-VKHMYHEASA-N
InChi Code
InChI=1S/C5H7NO4/c1-9-4(7)3-2-10-5(8)6-3/h3H,2H2,1H3,(H,6,8)/t3-/m0/s1
Chemical Name
methyl (4S)-2-oxo-1,3-oxazolidine-4-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 6.8913 mL 34.4566 mL 68.9132 mL
5 mM 1.3783 mL 6.8913 mL 13.7826 mL
10 mM 0.6891 mL 3.4457 mL 6.8913 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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