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Deoxycytidine triphosphate disodium

Alias: dCTP disodium; 2′-Deoxycytidine-5′-triphosphate disodium
Cat No.:V106550 Purity: ≥98%
Deoxycytidine triphosphate (dCTP; 2′-deoxycytidine-5′-triphosphate) disodium is a biochemical reagent that can be used as a biological material or organic compound related to life science research.
Deoxycytidine triphosphate disodium
Deoxycytidine triphosphate disodium Chemical Structure CAS No.: 102783-51-7
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
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10mg
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Product Description
Deoxycytidine triphosphate (dCTP; 2′-Deoxycytidine-5′-triphosphate) disodium is a biochemical reagent that can be used as a biomaterial or organic compound related to life science research.
Deoxycytidine triphosphate disodium (dCTP disodium; 2′-Deoxycytidine-5′-triphosphate disodium; CAS# 102783-51-7; C9H14N3Na2O13P3; MW 511.12) is a nucleotide triphosphate, one of the four building blocks for DNA synthesis. It is a biochemical reagent used in molecular biology for PCR, DNA sequencing, and other DNA polymerase-driven reactions. dCTP is a substrate for DNA polymerases and reverse transcriptases. The disodium salt form enhances water solubility and stability.
Biological Activity I Assay Protocols (From Reference)
Targets
dCTP is a substrate for DNA polymerases and reverse transcriptases, which incorporate it into the growing DNA chain opposite a guanine (G) base. It acts as a donor of deoxycytidine monophosphate (dCMP) during DNA replication, repair, and PCR. The triphosphate group provides the energy for the phosphodiester bond formation. dCTP is not a drug but an essential reagent for nucleic acid amplification and sequencing technologies.
ln Vitro
In vitro, dCTP (10-200 uM) is used as a substrate in PCR reactions to amplify target DNA sequences. It is also used in DNA sequencing (Sanger sequencing) along with dideoxynucleotides (ddNTPs). dCTP is a component of the dNTP mix for reverse transcription of RNA to cDNA. The purity (>98%) is confirmed by HPLC. The compound is not cytotoxic at concentrations used in PCR (1-1000 uM). It is a biochemical reagent, not a test agent for pharmacological studies.
ln Vivo
Not applicable. dCTP is not administered in vivo as a drug. It is used as a biochemical reagent for in vitro DNA synthesis. In cell culture, it can be added to the medium to support nucleotide pool balance, but it is not a therapeutic agent. dCTP is used in research on nucleotide metabolism and DNA replication. No therapeutic in vivo activity is reported.
Enzyme Assay
Not applicable. dCTP is a nucleotide, not a standard enzyme inhibitor. Its purity (>98%) is assessed by HPLC. The structure is confirmed by ¹H NMR and 3¹P NMR. Physicochemical properties: MW 511.12, white powder, soluble in water (50-100 mg/mL), stored at -20degC. The compound is moisture-sensitive and should be protected from light. For molecular biology applications, it is used as a component of dNTP mixes. For quality control, the concentration is measured by UV absorbance at 260 nm (ε = 1.5×10⁴ M-¹ cm-¹).
Cell Assay
Not applicable. dCTP is not used in standard cell-based assays for drug discovery. For toxicity screening, HepG2 or HEK293 cells are seeded in 96-well plates (1×10⁴ cells/well) and treated with dCTP (1-1000 uM) for 24-72 h. Cell viability is measured by MTT assay. The CC₅0 is expected to be >1000 uM, indicating very low cytotoxicity. The compound is a nucleotide, not a test agent for pharmacological studies. For nucleotide pool analysis, cells are lysed and intracellular dNTPs are extracted and measured by LC-MS/MS.
Animal Protocol
No in vivo animal protocol for dCTP exists, as it is not a drug candidate. For metabolic studies, male Sprague-Dawley rats (200-250 g, n=6/group) are administered a radioactive nucleotide precursor (e.g., [3H]-cytidine), and the incorporation into dCTP pools in tissues is measured. dCTP itself is not administered. The compound is a research reagent, not a test agent for animal studies.
ADME/Pharmacokinetics
No PK data for dCTP is available, as it is not a drug. It is a highly polar, negatively charged molecule that is not passively absorbed. It is used exclusively as an in vitro reagent. For research use, it is stored as a solution at -20degC (protected from light) or as a lyophilized powder at -20degC. Repeated freeze-thaw cycles should be avoided.
Toxicity/Toxicokinetics
For dCTP disodium, hazard statements: H315 (Causes skin irritation), H319 (Causes serious eye irritation), H335 (May cause respiratory irritation). Signal word: Warning. Precautionary statements: P261 (Avoid breathing dust/fume/gas/mist/vapors/spray), P280 (Wear protective gloves/protective clothing/eye protection/face protection), P305+P351+P338 (IF IN EYES: Rinse cautiously with water for several minutes). Storage: at -20degC, sealed, protect from light.
Additional Infomation
dCTP disodium (Deoxycytidine triphosphate disodium; CAS# 102783-51-7) is a research-grade nucleotide reagent for molecular biology. It is not an FDA-approved drug. It is used as a substrate for DNA polymerases in PCR, DNA sequencing, and cDNA synthesis. For research use only, not for diagnostic or therapeutic applications. Purity: ≥98%. Storage: -20degC, sealed, protect from light.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H14N3NA2O13P3
Molecular Weight
511.12
CAS #
102783-51-7
Appearance
White to off-white solid powder
LogP
0.275
SMILES
P(=O)(O[H])(OP(=O)(O[H])OP(=O)(O[H])O[H])OC([H])([H])[C@]1([H])[C@]([H])(C([H])([H])[C@]([H])(N2C(N=C(C([H])=C2[H])N([H])[H])=O)O1)O[H].[Na].[Na] |^1:44,45|
Synonyms
dCTP disodium; 2′-Deoxycytidine-5′-triphosphate disodium
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~125 mg/mL (~244.56 mM; with ultrasonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9565 mL 9.7824 mL 19.5649 mL
5 mM 0.3913 mL 1.9565 mL 3.9130 mL
10 mM 0.1956 mL 0.9782 mL 1.9565 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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