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N-(NHS ester-PEG2)-N-bis(PEG3-azide)

Cat No.:V103979 Purity: ≥98%
N-(NHS ester-PEG2)-N-bis(PEG3-azide) is a PEG linker with an NHS ester group and two terminal azide groups.
N-(NHS ester-PEG2)-N-bis(PEG3-azide)
N-(NHS ester-PEG2)-N-bis(PEG3-azide) Chemical Structure Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
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Product Description
N-(NHS ester-PEG2)-N-bis(PEG3-azide) is a PEG linker with an NHS ester group and two terminal azide groups. N-(NHS ester-PEG2)-N-bis(PEG3-azide) can be used for click chemistry.
N-(NHS ester-PEG2)-N-bis(PEG3-azide) is a PEG linker with an NHS ester group and two terminal azide groups. Its molecular formula is C28H48N8O13, and its molecular weight is 704.73. This compound is a biochemical assay reagent, and it can be used for Click Chemistry applications. The color to light yellow liquid should be stored under nitrogen.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable. N-(NHS ester-PEG2)-N-bis(PEG3-azide) is a PROTAC linker and PEG-based chemical reagent. It has no direct biological target. The NHS ester group reacts with primary amines (e.g., lysine residues on proteins) to form stable amide bonds. The two terminal azide groups can participate in copper-catalyzed azide-alkyne cycloaddition (CuAAC) click chemistry reactions, allowing conjugation to alkyne-containing molecules. The PEG spacers (PEG2 and PEG3) increase water solubility and flexibility.
ln Vitro
The compound itself has no direct in vitro biological activity. It is a building block for PROTAC synthesis and bioconjugation. Its activity is assessed after conjugation to an E3 ligase ligand and a target protein ligand. The resulting PROTAC is then evaluated for its ability to induce target protein degradation in cells. The NHS ester group reacts with primary amines under mild conditions (pH 7-8), and the azide groups are stable and biocompatible.
ln Vivo
The compound is not a drug; it is a PROTAC linker and bioconjugation reagent. PROTACs synthesized using this linker can have potent in vivo activity. In xenograft mouse models, PROTACs are administered intraperitoneally or intravenously (10-100 mg/kg) once daily for 2-4 weeks. They induce sustained degradation of target proteins in tumors (>80% reduction) and inhibit tumor growth. This linker can be used for the synthesis of PROTACs and other conjugates.
Enzyme Assay
Not applicable. N-(NHS ester-PEG2)-N-bis(PEG3-azide) is a PROTAC linker and bioconjugation reagent, not a standard enzyme inhibitor. Its purity (>98%) is assessed by HPLC. The structure is confirmed by ¹H NMR, ¹3C NMR, and mass spectrometry (ESI-MS, expected [M+H]+ m/z 705). Physicochemical properties: MW 704.73, colorless to light yellow liquid, soluble in DMSO. The NHS ester is reactive with primary amines; the azide groups are stable.
Cell Assay
Not applicable. N-(NHS ester-PEG2)-N-bis(PEG3-azide) is not used directly in cell-based assays; it is a building block for PROTAC synthesis. For PROTAC evaluation, cells expressing the target protein are seeded in 6-well plates (3×10⁵ cells/well) and treated with the PROTAC (0.1-1000 nM) for 4-24 h. Target protein degradation is assessed by Western blotting. DC₅0 is calculated from the dose-response curve. Cell viability is measured by MTT or CellTiter-Glo.
Animal Protocol
In vivo efficacy of PROTACs incorporating this linker can be evaluated in xenograft mouse models. Female BALB/c nude mice (6-8 wk) are subcutaneously inoculated with 5×10⁶ cancer cells. When tumors reach ~100-150 mm3, mice are randomized into treatment groups (n=6-8/group). The PROTAC is formulated in 10% DMSO + 40% PEG300 + 5% Tween 80 + 45% saline and administered intraperitoneally at 10-100 mg/kg once daily or every other day for 2-4 weeks. Tumor volume is measured every 3 days, and tumors are excised for Western blot analysis.
ADME/Pharmacokinetics
No specific PK data is available for N-(NHS ester-PEG2)-N-bis(PEG3-azide) alone. When incorporated into a PROTAC (MW 800-1200), the overall PK properties are determined by the full PROTAC molecule. PROTACs generally have moderate to low oral bioavailability (<20%), short plasma half-life (1-4 h), high plasma protein binding (>90%), and rapid clearance. The PEG2 and PEG3 linkers improve solubility and may reduce aggregation.
Toxicity/Toxicokinetics
For N-(NHS ester-PEG2)-N-bis(PEG3-azide), hazard statements: H315 (Causes skin irritation), H319 (Causes serious eye irritation), H335 (May cause respiratory irritation). Signal word: Warning. Precautionary statements: P261 (Avoid breathing dust/fume/gas/mist/vapors/spray), P280 (Wear protective gloves/protective clothing/eye protection/face protection), P305+P351+P338 (IF IN EYES: Rinse cautiously with water for several minutes). Storage: at -20degC, sealed, under inert gas (nitrogen), protect from light and moisture.
References

[1]. Introduction: Click Chemistry. Chem Rev. 2021 Jun 23;121(12):6697-6698.

Additional Infomation
N-(NHS ester-PEG2)-N-bis(PEG3-azide) (MW 704.73) is a research-grade PEG-based PROTAC linker and click chemistry reagent. It is not an FDA-approved drug. It is used for the synthesis of PROTACs and bioconjugates via NHS ester-amine coupling and CuAAC click chemistry. For research use only, not for diagnostic or therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C28H48N8O13
Molecular Weight
704.73
Appearance
Colorless to light yellow liquid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.4190 mL 7.0949 mL 14.1898 mL
5 mM 0.2838 mL 1.4190 mL 2.8380 mL
10 mM 0.1419 mL 0.7095 mL 1.4190 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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