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D-Glyceric acid sodium

Cat No.:V103224 Purity: ≥98%
Sodium D-glycerate is the sodium salt form of D-glyceric acid.
D-Glyceric acid sodium
D-Glyceric acid sodium Chemical Structure CAS No.: 109175-64-6
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
50mg
Other Sizes

Other Forms of D-Glyceric acid sodium:

  • D-Glyceric acid
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
D-Glyceric acid sodium is the sodium salt form of D-Glyceric acid. D-Glyceric acid is an endogenous metabolite found in urine and is used to study primary hyperoxalicemia type I and glutaric acidemia type 2.
D-Glyceric acid sodium is the sodium salt form of D-Glyceric acid, which is an endogenous metabolite that can be detected in normal human urine. It is a 3-carbon sugar acid that plays a role in metabolic pathways related to serine and glycine metabolism. This compound is used as a research reagent for studying inborn errors of metabolism, specifically primary hyperoxaluria type I and glutaric acidemia type 2. It is also used as an analytical standard in metabolomics.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable. D-Glyceric acid is an endogenous metabolite, not a drug with a specific protein target. It is an intermediate in the metabolic pathways of the body. Its sodium salt form is used as a reference standard for analytical methods. In the context of disease research, it serves as a biomarker. Elevated levels of D-Glyceric acid in urine are characteristic of specific metabolic disorders.
ln Vitro
D-Glyceric acid sodium is an endogenous metabolite and is not a pharmacologically active compound in the traditional sense. It is not an enzyme inhibitor or receptor agonist. Its "activity" is limited to its role in the metabolic pathway and its use as an analytical standard. It is used as a research tool for the investigation of metabolic disorders, including primary hyperoxaluria type I and glutaric acidemia type 2.
ln Vivo
No in vivo data is provided for D-Glyceric acid sodium itself, as it is not an administered drug. In the context of the diseases it is used to study, the levels of D-Glyceric acid in the body are altered. For example, in patients with glutaric acidemia type II, the body cannot properly break down proteins and fats, leading to the accumulation of D-Glyceric acid in the urine.
Enzyme Assay
Not applicable. D-Glyceric acid sodium is a biochemical reagent and analytical standard, not a drug candidate. As a standard, it is used to calibrate instruments and validate methods for metabolomics analysis. A typical protocol involves dissolving the sodium salt in water or methanol to create calibration standards of known concentrations (e.g., 0.5, 1, 5, 10, 50, 100 uM). These are then analyzed by LC-MS/MS to generate a standard curve.
Cell Assay
Not applicable. D-Glyceric acid sodium is not a drug and is not used in cell-based assays as a pharmacological agent. It may be added to the culture medium of hepatocytes or fibroblasts derived from patients with metabolic disorders to study the metabolic flux through the relevant pathways, but it is not used as a therapeutic or to stimulate a response.
Animal Protocol
Not applicable. D-Glyceric acid sodium is not administered to animals in a drug-like fashion. For research purposes, it may be spiked into serum or urine samples from animal models of primary hyperoxaluria type I or glutaric acidemia type II to serve as a quality control standard for the quantification of the metabolite by an analytical method.
ADME/Pharmacokinetics
Not applicable. D-Glyceric acid sodium is an endogenous metabolite and an analytical standard. It is not a xenobiotic drug, and its pharmacokinetics are not studied. D-Glyceric acid is produced and metabolized in the body, and its concentration in biofluids is a function of the balance between production and clearance.
Toxicity/Toxicokinetics
Not applicable. D-Glyceric acid is an endogenous, naturally occurring compound. Its sodium salt is a biochemical that is considered safe to handle under standard laboratory conditions. There is no toxicological concern for this compound when used as an analytical reagent.
References

[1]. Endogenous toxic metabolites and implications in cancer therapy. Oncogene. 2020 Aug;39(35):5709-5720.

[2]. Extraction of glyceric and glycolic acids from urine with tetrahydrofuran: utility in detection of primary hyperoxaluria. Clin Chem. 1997 Aug;43(8 Pt 1):1315-20.

[3]. Long-term prognosis in primary hyperoxaluria type II (L-glyceric aciduria). Am J Kidney Dis. 1994 Feb;23(2):255-9.

Additional Infomation
D-Glyceric acid sodium is a research-grade biochemical and analytical standard. Its CAS number is 109175-64-6, molecular formula is C3H₅NaO4, and molecular weight is 128.06. It is supplied with high purity (typically ≥99%). The compound is intended for laboratory research only and is not for human consumption. It is soluble in water and should be stored at 4degC. Each product in one row, fields tab-separated.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C3H5NAO4
Molecular Weight
128.06
Exact Mass
128.009
CAS #
109175-64-6
Related CAS #
D-Glyceric acid calcium hydrate; D-Glyceric acid; 6000-40-4
PubChem CID
155487365
Appearance
White to off-white solid powder
Hydrogen Bond Donor Count
2
Rotatable Bond Count
2
Heavy Atom Count
8
Complexity
73.7
Defined Atom Stereocenter Count
1
SMILES
C([C@H](C(=O)[O-])O)O.[Na+]
InChi Key
IUEMQUIQAPPJDL-HSHFZTNMSA-M
InChi Code
InChI=1S/C3H6O4.Na/c4-1-2(5)3(6)7;/h2,4-5H,1H2,(H,6,7);/q;+1/p-1/t2-;/m1./s1
Chemical Name
sodium (2R)-2,3-dihydroxypropanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ≥ 50 mg/mL (~390.44 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution → 50 μL Tween 80 → 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300 :Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO → 400 μLPEG300 → 50 μL Tween 80 → 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO → 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO → 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin → 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO → 100 μLPEG300 → 200 μL castor oil → 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol → 100 μL Cremophor → 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH → 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300:Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH → 400 μLPEG300 → 50 μL Tween 80 → 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.8088 mL 39.0442 mL 78.0884 mL
5 mM 1.5618 mL 7.8088 mL 15.6177 mL
10 mM 0.7809 mL 3.9044 mL 7.8088 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration: mg/mL;

Method for preparing DMSO stock solution: mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation::Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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