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DMABA NHS ester

Cat No.:V102706 Purity: ≥98%
DMABA NHS ester chemically reacts with the primary amine groups of phosphatidylethanolamine (PE), the major phospholipid component of cell membranes.
DMABA NHS ester
DMABA NHS ester Chemical Structure CAS No.: 58068-85-2
Product category: Biochemical Assay Reagents
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes

Other Forms of DMABA NHS ester:

  • DMABA-d4 NHSester
  • DMABA-d6 NHS ester
  • DMABA-d10 NHSester
Official Supplier of:
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Product Description
DMABA NHS ester can react chemically with the primary amine group of Phosphatidylethanolamine (PE), the main phospholipid component of cell membranes. All DMABA-labeled PE subtypes can be detected by precursor ion scanning. DMABA NHS ester can be used in combination with isotope labels DMABA-d6 NHS ester, DMABA-d10 NHS ester and DMABA-d4 NHS ester to observe changes in PE lipid distribution and new PE lipid products.
DMABA NHS ester (4-(Dimethylamino)benzoic acid N-hydroxysuccinimide ester) is a heterobifunctional amine-reactive labeling reagent used for the covalent conjugation to primary amines. It comprises an NHS ester moiety for conjugation to amine groups and a DMABA chromophore with ultraviolet absorption and blue fluorescence. This compound is used in lipidomics, proteomics, and bioconjugation research for labeling phosphatidylethanolamine (PE) lipids, proteins, and peptides. For research use only.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable. DMABA NHS ester is a chemical labeling reagent, not a drug with a specific biological target. Its primary "target" is primary amine groups (-NH2) on biomolecules, including the ε-amine of lysine residues in proteins and the amine group of phosphatidylethanolamine (PE) lipids. The NHS ester group reacts with these amines to form stable amide bonds, enabling the covalent attachment of the DMABA moiety for detection and quantification by mass spectrometry or fluorescence.
ln Vitro
DMABA NHS ester has no direct biological activity. Its in vitro utility is as a chemical labeling reagent. It reacts selectively with the primary amine group of phosphatidylethanolamine (PE) lipids, enabling detection of all PE subclasses (diacyl, ether, and plasmalogen) in a single LC-MS/MS run. The integrated DMABA chromophore enables universal precursor ion scanning (m/z 191.1) detection and quantification in lipidomics. Deuterated isotopologues (d4, d6, d10) support multiplexed quantitation for comparative studies. It is also used for protein and peptide labeling.
ln Vivo
No in vivo data is applicable. DMABA NHS ester is not intended for in vivo administration; it is used exclusively as an in vitro chemical labeling reagent for mass spectrometry-based lipidomics and proteomics. Any in vivo studies would be performed by administering unlabeled compounds to animals and then using DMABA NHS ester ex vivo to derivatize extracted lipids from tissues for LC-MS/MS analysis. The compound itself is not administered as a therapeutic agent.
Enzyme Assay
Standard PE lipid labeling and detection protocol: Lipid extracts are prepared from biological samples. DMABA NHS ester (1-10 mM in DMF or DMSO) is added to the lipid extract in the presence of a base (e.g., triethylamine) and incubated at room temperature for 30-60 minutes. After labeling, the reaction mixture is dried, reconstituted in mobile phase, and analyzed by LC-MS/MS with precursor ion scanning for m/z 191.1 (the DMABA-specific fragment) to detect all DMABA-labeled PE species. For protein labeling, DMABA NHS ester is reacted with proteins in PBS (pH 7.5) at room temperature for 1-2 hours.
Cell Assay
Not applicable. DMABA NHS ester is a chemical labeling reagent used on extracted biomolecules or purified proteins, not on live cells as a pharmacological agent. For in vitro cell studies, cells may be treated with experimental compounds, harvested, and the extracted lipids or proteins are then derivatized ex vivo with DMABA NHS ester for mass spectrometry analysis. It is not added directly to live cells as a treatment.
Animal Protocol
No specific in vivo protocol is provided. For ex vivo lipidomics studies, animals (e.g., mice) are treated with experimental compounds or diets, then tissues (e.g., liver, plasma, brain) are harvested. Lipids are extracted using a modified Bligh-Dyer method, and the extracted PE lipids are derivatized with DMABA NHS ester as described above. The derivatized lipids are analyzed by LC-MS/MS for relative quantitation of PE species. The labeling reagent itself is not administered in vivo.
ADME/Pharmacokinetics
Not applicable. DMABA NHS ester is a chemical labeling reagent, not a drug candidate. Pharmacokinetic properties are not characterized. The NHS ester is reactive with water and will hydrolyze in aqueous solutions; therefore, labeling reactions are performed in organic solvents or in aqueous buffers for short time periods. The compound is typically dissolved in anhydrous DMF or DMSO immediately before use to prevent hydrolysis.
Toxicity/Toxicokinetics
DMABA NHS ester is a chemical reagent and should be handled with standard laboratory safety precautions. The NHS ester is reactive and may be an irritant to skin and eyes. Material safety data recommends handling in a fume hood with appropriate personal protective equipment (gloves, lab coat, goggles). No specific toxicological data for this compound is available, as it is not intended for human consumption. For research use only.
References

[1]. Stable isotope labeled 4-(dimethylamino)benzoic acid derivatives of glycerophosphoethanolamine lipids. Anal Chem. 2009 Aug 15;81(16):6633-40.

Additional Infomation
DMABA NHS ester (CAS: 58068-85-2) has molecular formula C13H14N2O4 and molecular weight 262.26. Purity ≥98%. Appearance: Crystalline solid. Absorbance maxima: 233 nm and 323 nm. Soluble in DMF and DMSO (20 mg/mL). Synonyms: 4-(Dimethylamino)benzoic acid N-hydroxysuccinimide ester; N-Succinimidyl 4-(dimethylamino)benzoate. For research use as a labeling reagent in lipidomics and proteomics.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H14N2O4
Molecular Weight
262.26
Exact Mass
262.095
CAS #
58068-85-2
Related CAS #
DMABA-d4 NHS ester;1175002-03-5;DMABA-d6 NHS ester;1175002-04-6;DMABA-d10 NHS ester;1175002-05-7
PubChem CID
71312544
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
416.4±47.0 °C at 760 mmHg
Flash Point
205.6±29.3 °C
Vapour Pressure
0.0±1.0 mmHg at 25°C
Index of Refraction
1.598
LogP
0.36
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
19
Complexity
370
Defined Atom Stereocenter Count
0
SMILES
CN(C)C1=CC=C(C=C1)C(=O)ON2C(=O)CCC2=O
InChi Key
FNGFZOAQGYOQTG-UHFFFAOYSA-N
InChi Code
InChI=1S/C13H14N2O4/c1-14(2)10-5-3-9(4-6-10)13(18)19-15-11(16)7-8-12(15)17/h3-6H,7-8H2,1-2H3
Chemical Name
(2,5-dioxopyrrolidin-1-yl) 4-(dimethylamino)benzoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMF : ~20 mg/mL (~76.26 mM; with heating and sonication)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.8130 mL 19.0650 mL 38.1301 mL
5 mM 0.7626 mL 3.8130 mL 7.6260 mL
10 mM 0.3813 mL 1.9065 mL 3.8130 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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