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Z-IETD-R110

Alias: Z-IETD-R110; Z-IETD R110;
Z-IETD-R110 is a fluorescent substrate for cysteine proteases (caspases).
Z-IETD-R110
Z-IETD-R110 Chemical Structure Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
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500mg
1g
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Product Description
Z-IETD-R110 is a fluorescent substrate for cysteine proteases (caspases). Z-IETD-R110 is a substrate for caspase-8. When caspase-8 is activated, it recognizes and cleaves Z-IETD-R110, releasing the fluorophore, which can be detected by fluorescence microscopy as an increase in fluorescence signal. Z-IETD-R110 has been used to study oxidative stress-induced apoptosis, especially in pancreatic acinar cells.
Biological Activity I Assay Protocols (From Reference)
Targets
Caspase-8
ln Vitro
Marked caspase-8 activation was demonstrated in a minority of isolated pancreatic acinar cells by using a fluorescent probe-linked caspase-8 substrate (Z-IETD-R110). Menadione (30 μM) induced a significant increase (P < 0.00018) in the fluorescence of 15 ± 2% of acinar cells (Fig. 1B). Apoptosis-positive cells displayed a high increase in fluorescence (∼10.9 ± 0.8-fold) compared with control cells (Fig. 2A). Fluorescence of the caspase-8 substrate increased within 30 min after application of menadione (Fig. 2B). These data show that caspase-8 was activated in response to the menadione-induced oxidative stress. Confocal-microscopy images (Fig. 2C) show homogeneous distribution of fluorescence throughout the cell, suggesting predominantly cytosolic localization of activated caspase-8. [1]
Cell Assay
Caspase activation. [1]
Isolated pancreatic acinar cells were washed and suspended in calcium-free buffer solution (140 mM NaCl, 1.13 mM MgCl2, 4.7 mM KCl, 10 mM glucose, 0.1 M EDTA, and 10 mM HEPES, pH 7.2). Cells were then loaded with fluorescent indicator-linked substrates for activated caspase-2 (10 μM Z-VDAD-R110), caspase-8 (10 μM Z-IETD-R110), caspase-9 (10 μM Z-LEHD-R110), or general caspases (10 μM R110-aspartic acid amide) at room temperature for 20 min or for caspase-10 (50 μM AEVD-AFC) or caspase-12 (50 μM ATAD-AFC) at 37°C for 1 h. Caspase substrates (except for the general substrate) used in this study were specific for the relevant initiator caspases, as reported. To avoid activation of substrates by executioner caspases, all experiments were strictly limited to the first 30 min after induction of apoptosis by menadione. After loading, cells were washed and resuspended in calcium-free buffer solution. The isolated cells were placed on a Leica SP2 confocal microscope stage, and fluorescence was imaged over time (excitation 488 nm, emission 505–543 nm for caspase-2, -8, -9, or general caspase substrates; excitation 405 nm, emission 475–600 nm for caspase-10 and -12 substrates). Cells were then treated with 30 μM menadione. To examine colocalization of caspase activation and the position of mitochondria, cells were also loaded with MitoTracker Deep Red 633 (50 nM, excitation 633 nm, emission <650 nm) or tetramethyl rhodamine methyl ester (100 nM, excitation 543 nm, emission >600 nm) at 37°C for 15 or 20 min, respectively. Cells were then washed and resuspended in standard buffer solution.
References

[1]. Baumgartner H K, et al. Caspase-8-mediated apoptosis induced by oxidative stress is independent of the intrinsic pathway and dependent on cathepsins[J]. American Journal of Physiology-Gastrointestinal and Liver Physiology, 2007, 293(1): G296-G307.

Additional Infomation
Although the severity of experimental pancreatitis is correlated with the ratio of apoptosis to necrosis, the cell death program executed in the pancreas under pathological conditions remains incompletely elucidated. We elucidated the mechanism by which the oxidative stressor menadione induces apoptosis in pancreatic acinar cells. Real-time monitoring of initiating caspase activity showed that within 30 minutes of menadione administration, 66% of cells activated caspase-9, and 15% activated caspase-8, but no activation of caspase-2, -10, or -12 was detected. Interestingly, inhibition of caspase-9 activation increased caspase-8 activation. The half-maximal activation (t0.5) of caspase-9 occurred within approximately 2 minutes and was localized in or near the mitochondria; while the t0.5 of caspase-8 occurred approximately 26 minutes after menadione treatment and was uniformly distributed throughout the cell. The calcium chelator BAPTA or the mitochondrial permeability transition pore inhibitor ponkelidine completely blocked the activation of caspase-9, but had no effect on the activation of caspase-8. In contrast, lysosomal disruption (pre-incubation with cathepsin C substrate Gly-Phe β-naphthamide), loss of lysosomal acidity (bafloxacin A1), or inhibition of cathepsin L or D blocked the activation of caspase-8, but had no effect on the activation of caspase-9. We used the pepsin inhibitor A-BODIPY FL conjugate to demonstrate that cathepsin D translocates from lysosomes in the presence of menadione. We concluded that the oxidative stressor menadione induces two independent apoptotic pathways in pancreatic acinar cells: one is the classic mitochondrial calcium-dependent pathway, which is rapidly initiated in most cells; the other is a slower, caspase-8-mediated pathway that depends on the lysosomal activity of cathepsins and is initiated when the caspase-9 pathway is inhibited. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C74H86N10O25
Molecular Weight
1515.53
Exact Mass
1514.576558
PubChem CID
171713852
Sequence
(Z-Ile-Glu-Thr-Asp)2-Rhodamine 110
SequenceShortening
(Z-IETD)2-Rhodamine 110
Appearance
Typically exists as solids at room temperature
Hydrogen Bond Donor Count
16
Hydrogen Bond Acceptor Count
24
Rotatable Bond Count
41
Heavy Atom Count
109
Complexity
2960
Defined Atom Stereocenter Count
12
SMILES
CC[C@H](C)[C@@H](C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(=O)O)C(=O)NC1=CC2=C(C=C1)C(=C3C=CC(=CC3=[O+]2)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H]([C@@H](C)CC)NC(=O)OCC4=CC=CC=C4)C5=CC=CC=C5C(=O)[O-])NC(=O)OCC6=CC=CC=C6
InChi Key
DSMSOMVESVLVDG-TVEQXDRTSA-N
InChi Code
InChI=1S/C74H86N10O25/c1-7-37(3)60(83-73(105)107-35-41-17-11-9-12-18-41)68(99)77-49(27-29-55(87)88)64(95)81-62(39(5)85)70(101)79-51(33-57(91)92)66(97)75-43-23-25-47-53(31-43)109-54-32-44(24-26-48(54)59(47)45-21-15-16-22-46(45)72(103)104)76-67(98)52(34-58(93)94)80-71(102)63(40(6)86)82-65(96)50(28-30-56(89)90)78-69(100)61(38(4)8-2)84-74(106)108-36-42-19-13-10-14-20-42/h9-26,31-32,37-40,49-52,60-63,85-86H,7-8,27-30,33-36H2,1-6H3,(H14-,75,76,77,78,79,80,81,82,83,84,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106)/t37-,38-,39+,40+,49-,50-,51-,52-,60-,61-,62-,63-/m0/s1
Chemical Name
2-[3,6-bis[[(2S)-3-carboxy-2-[[(2S,3R)-2-[[(2S)-4-carboxy-2-[[(2S,3S)-3-methyl-2-(phenylmethoxycarbonylamino)pentanoyl]amino]butanoyl]amino]-3-hydroxybutanoyl]amino]propanoyl]amino]xanthen-10-ium-9-yl]benzoate
Synonyms
Z-IETD-R110; Z-IETD R110;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.6598 mL 3.2992 mL 6.5984 mL
5 mM 0.1320 mL 0.6598 mL 1.3197 mL
10 mM 0.0660 mL 0.3299 mL 0.6598 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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