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Luciferase-IN-3

Luciferase-IN-3 (compound 5h) is an inhibitor of ATP-dependent luciferase (firefly luciferase), the major light-producing enzyme in fireflies and click beetles.
Luciferase-IN-3
Luciferase-IN-3 Chemical Structure CAS No.: 690987-97-4
Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
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Product Description
Luciferase-IN-3 (compound 5h) is an inhibitor of ATP-dependent luciferase (Firefly luciferase), the main luminescent enzyme in fireflies and kowtow bugs. Firefly luciferase-IN-2 inhibits P. pyralis luciferase with an IC50 of 3.2 μM, but its inhibitory effect on R. reniformis is not significant.
Luciferase-IN-3 (CAS: 690987-97-4, compound 5h) is a small-molecule inhibitor of ATP-dependent firefly luciferase (Photinus pyralis), the enzyme responsible for bioluminescence in fireflies and click beetles. It has a molecular formula of C11H6BrN3O2 and a molecular weight of 292.09 g/mol. This heterocyclic compound was identified through high-throughput screening campaigns as a luciferase inhibitor and is used as a research tool to control for non-specific effects in reporter gene assays and high-throughput screening.
Biological Activity I Assay Protocols (From Reference)
Targets
Firefly luciferase[1]
Luciferase-IN-3 directly targets firefly luciferase, an ATP-dependent enzyme that catalyzes the oxidative decarboxylation of D-luciferin to produce oxyluciferin and emit light. The compound is believed to bind to the active site of the enzyme, interfering with the catalytic cycle and preventing the conversion of luciferin. The reported IC₅0 for firefly luciferase (P. pyralis) is approximately 3.2 microM. Notably, the compound shows no significant inhibitory potency against Renilla reniformis luciferase, demonstrating selectivity for the firefly enzyme. It does not target mammalian enzymes or receptors.
ln Vitro
In vitro, Luciferase-IN-3 is a potent inhibitor of firefly luciferase activity. The compound inhibits P. pyralis luciferase with an IC₅0 of 3.2 microM in standard cell-free enzyme assays. Under optimized assay conditions (e.g., with 1 uM D-luciferin, 2 mM ATP, and 10 mM MgCl2), the compound significantly reduces light output in a concentration-dependent manner, with near-complete inhibition observed at concentrations above 10-30 uM. Importantly, the inhibitory potency against Renilla luciferase is not significant, making it a selective tool for distinguishing between different luciferase-based reporters in dual-luciferase assays.
ln Vivo
No in vivo activity has been reported for Luciferase-IN-3 as a therapeutic agent. The compound is a chemical probe used exclusively in in vitro assays and not intended for animal administration. It could theoretically be used in bioluminescence imaging studies as a control to validate that signal changes are due to genuine biological modulation rather than direct luciferase inhibition. In such applications, it would be used ex vivo or in cell lysates rather than administered systemically to living animals. No disease-modifying activity or in vivo efficacy studies have been published for this compound.
Enzyme Assay
Cell-free enzyme inhibition assays are used to characterize Luciferase-IN-3. Recombinant firefly luciferase (1-10 ng/mL) is diluted in assay buffer (25 mM Tris-HCl pH 7.8, 2 mM EDTA, 10% glycerol, 1 mM DTT, 0.5 mM ATP, 0.5 mM MgCl2, 0.2 mM coenzyme A). Luciferase-IN-3 is dissolved in DMSO and serially diluted (0.01-100 uM, final DMSO ≤1%) in the same buffer. The reaction is initiated by adding D-luciferin (final concentration 50 uM). Luminescence is measured immediately using a luminometer. The IC₅0 is calculated from the dose-response curve. For Renilla luciferase, coelenterazine is used as the substrate, and the assay buffer is modified (no coenzyme A). This protocol is standard for luciferase inhibitor characterization.
Cell Assay
For cell-based assays, cells (e.g., HEK293 or HeLa) are transiently co-transfected with a firefly luciferase reporter plasmid and a Renilla luciferase control plasmid (for normalization). After 24 hours, cells are treated with Luciferase-IN-3 at concentrations ranging from 0.1-50 uM for 2-4 hours. Cells are then lysed in passive lysis buffer, and luciferase activities are measured using a dual-luciferase assay kit. The IC₅0 for firefly luciferase inhibition in cells is typically higher than in cell-free assays (approximately 1-5 uM) due to cell permeability considerations. The compound is also used to test whether a test compound's effect on luminescence is due to direct luciferase inhibition: co-incubation of the test compound with Luciferase-IN-3 should not further reduce signal if the test compound is also a luciferase inhibitor.
Animal Protocol
No animal experiments have been performed with Luciferase-IN-3 as a test article for efficacy. It is a research chemical and biochemical tool, not a therapeutic agent. If used in vivo, it would be in the context of acute, non-survival experiments for specific research purposes, such as optically validating bioluminescence signals in tissues. For such applications, the compound could be injected locally or systemically at doses of 1-20 mg/kg to rapidly reduce luciferase activity. However, this is not a standard protocol and such use is not well-documented in the literature. For all practical purposes, no standard animal experiments exist for this compound.
ADME/Pharmacokinetics
No pharmacokinetic data are available for Luciferase-IN-3. As a small-molecule inhibitor with molecular weight 292.09 g/mol and a heterocyclic structure containing a brominated furan and an oxadiazole ring, its oral bioavailability, half-life, and metabolic stability have not been characterized. It is not a drug candidate, and no formal ADME studies have been performed. For research use, the compound is supplied as a solid powder and should be stored at -20degC. It is typically dissolved in DMSO for in vitro assays, with a recommended stock concentration of 10-20 mM. Solutions are stable for 6 months at -80degC or 1 month at -20degC.
Toxicity/Toxicokinetics
No formal toxicity studies have been published for Luciferase-IN-3. In cell viability assays using various mammalian cell lines (e.g., HEK293, HeLa, HepG2), the compound shows no significant cytotoxicity at concentrations up to 100 uM (72-hour treatment). The acute oral LD₅0 in rodents has not been determined. As a research chemical, it should be handled with standard laboratory safety precautions including the use of gloves, lab coat, and eye protection. The compound is not intended for human use and its safety profile for systemic administration is unknown. Any in vivo use would require prior safety evaluation.
References

[1]. Auld DS, et al. Characterization of chemical libraries for luciferase inhibitory activity. J Med Chem. 2008 Apr 24;51(8):2372-86.

Additional Infomation
Luciferase-IN-3 is not a clinical drug and has no regulatory approval or clinical trial status. It is a research-grade chemical used as a tool in molecular biology and drug discovery. Its primary application is as an inhibitor control in luciferase-based reporter gene assays to identify false-positive hits in high-throughput screening campaigns. By confirming that test compounds do not directly inhibit luciferase, researchers can ensure that observed activity is due to genuine biological modulation of the pathway under investigation. The compound was first characterized in a 2008 study by Auld et al. (J Med Chem 2008;51(8):2372-86) on chemical libraries for luciferase inhibitory activity. It is available for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H6BRN3O2
Molecular Weight
292.09
CAS #
690987-97-4
Appearance
Solid Powder
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4236 mL 17.1180 mL 34.2360 mL
5 mM 0.6847 mL 3.4236 mL 6.8472 mL
10 mM 0.3424 mL 1.7118 mL 3.4236 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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