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Prodigiosin (Prodigiosine)

Alias: Prodigiosine BRN 4526727 NSC 47147
Cat No.:V9465 Purity: ≥98%
Prodigiosin (Prodigiosine) is a naturally occuring and secondary metabolite from Serratia marcescens.
Prodigiosin (Prodigiosine)
Prodigiosin (Prodigiosine) Chemical Structure CAS No.: 82-89-3
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes

Other Forms of Prodigiosin (Prodigiosine):

  • Prodigiosin HCl
Official Supplier of:
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Top Publications Citing lnvivochem Products
Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Prodigiosin (Prodigiosine) is a naturally occuring and secondary metabolite from Serratia marcescens. It exhibits a wide range of biological activities, including acting as an antimalarial, antifungal, immunosuppressant, and antibiotic agent.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
Prodigiosin treatment (25–500 nM; 24 hours) decreased the viability of breast cancer cells, with an IC50 value of 261.2 in MDA-MB-468 cells and 62.52 nM in MDA-MB-231 cells at 48 hours. nM[1]. Prodigiosin treatment (25-500 nM; 24 hours) markedly decreased the levels of total β-catenin, active β-catenin, and phosphorylated LRP6 and DVL2. In HEK293T cells, prodigiosin strongly suppresses GSK3β Ser9 phosphorylation, indicating increased GSK3β activity [1]. Breast cancer cells can undergo apoptosis and be inhibited from proliferating when exposed to prodigiosine [1]. In transfected HEK293T cells, prodigiosin treatment (25–500 nM; 24 hours) dose-dependently inhibits Wnt signaling triggered by Wnt1, Wnt3, Wnt1/LRP6, Wnt3/LRP6, and Disheveled 2 (DVL2). The Wnt3A-CM-induced transcription was dose-dependently suppressed by prodigiosin administration. When Wnt transfection or Wnt3A therapy is applied, the SuperTopFlash reporter gene's transcription is inhibited by prodigiosin [1]. Applying this substance to cultures of Batrachochytrium dendrobatidis and B. Prodigiosin and salamandrivorans both significantly restrict growth, having MIC values of 10 μM and 50 μM, respectively [2].
ln Vivo
Tumor growth was markedly reduced by prodigiosin (5 mg/kg; intraperitoneal injection; twice weekly; for 3 weeks). Ki-67, a marker of proliferation, can be expressed less frequently in tumor cells when treated with prodigiosin [1].
Cell Assay
Cell proliferation assay[1]
Cell Types: MDA-MB-231 and MDA-MB-468 Cell
Tested Concentrations: 10 nM, 25 nM, 50 nM, 100 nM, 250 nM, 500 nM, 1000 nM, 2500 nM, 5000 nM
Incubation Duration: 24 hrs (hours), 48 hrs (hours).
Experimental Results: Reduce the viability of breast cancer cells. The IC50 value of MDA-MB-231 cells at 48 hrs (hours) was 62.52 nM, and the IC50 value of MDA-MB-468 cells was 261.2 nM.

Western Blot Analysis[1]
Cell Types: HEK293T Cell
Tested Concentrations: 50 nM, 100 nM, 250 nM, 500 nM
Incubation Duration: 24 hrs (hours)
Experimental Results: Dramatically diminished levels of phosphorylated LRP6 and DVL2, active β-catenin and total β- Catenin.
Animal Protocol
Animal/Disease Models: Female BALB/c nude mice were injected with MDA-MB-231 cells [1].
Doses: 5 mg/kg.
Route of Administration: intraperitoneal (ip) injection; twice a week; for 3 consecutive weeks.
Experimental Results: Dramatically inhibited mouse tumor growth.
References

[1]. Prodigiosin inhibits Wnt/β-catenin signaling and exerts anticancer activity in breast cancer cells. Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13150-13155.

[2]. Prodigiosin, Violacein, and Volatile Organic Compounds Produced by Widespread Cutaneous Bacteria of Amphibians Can Inhibit Two Batrachochytrium Fungal Pathogens. Microb Ecol. 2018 May;75(4):1049-1062.

Additional Infomation
Prodigiosin is a member of the class of tripyrroles that is a red-coloured pigment with antibiotic properties produced by Serratia marcescens. It has a role as an antimicrobial agent, a biological pigment, a bacterial metabolite, an apoptosis inducer and an antineoplastic agent. It is a tripyrrole, an aromatic ether and a ring assembly.
Prodigiosine has been reported in Serratia marcescens and Vibrio gazogenes with data available.
4-Methoxy-5-((5-methyl-4-pentyl-2H-pyrrol-2-ylidene)methyl)- 2,2'-bi-1H-pyrrole. A toxic, bright red tripyrrole pigment from Serratia marcescens and others. It has antibacterial, anticoccidial, antimalarial, and antifungal activities, but is used mainly as a biochemical tool.
See also: Prodigiosin (annotation moved to).
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H25N3O
Molecular Weight
323.44
Exact Mass
323.2
CAS #
82-89-3
Related CAS #
Prodigiosin hydrochloride;56144-17-3
PubChem CID
135455579
Appearance
Brown to red solid powder
Density
1.12g/cm3
Boiling Point
542.4ºC at 760 mmHg
Flash Point
281.8ºC
Index of Refraction
1.591
LogP
4.776
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
7
Heavy Atom Count
24
Complexity
523
Defined Atom Stereocenter Count
0
SMILES
CCCCCC1=C(NC(=C1)/C=C\2/C(=CC(=N2)C3=CC=CN3)OC)C
InChi Key
SHUNBVWMKSXXOM-UNOMPAQXSA-N
InChi Code
InChI=1S/C20H25N3O/c1-4-5-6-8-15-11-16(22-14(15)2)12-19-20(24-3)13-18(23-19)17-9-7-10-21-17/h7,9-13,21-22H,4-6,8H2,1-3H3/b19-12-
Chemical Name
(2Z,5Z)-4-methoxy-5-((5-methyl-4-pentyl-1H-pyrrol-2-yl)methylene)-1,5-dihydro-2,2'-bipyrrolylidene
Synonyms
Prodigiosine BRN 4526727 NSC 47147
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~77.30 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0918 mL 15.4588 mL 30.9176 mL
5 mM 0.6184 mL 3.0918 mL 6.1835 mL
10 mM 0.3092 mL 1.5459 mL 3.0918 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT06502249 NOT YET RECRUITING Lung Cancer
NSCLC
Ain Shams University 2026-06
Biological Data
  • Prodigiosin specifically inhibits the Wnt/β-catenin signaling pathway. (A) Structure of prodigiosin and obatoclax. (B–F) The SuperTopFlash reporter gene was transfected into HEK293T cells together with empty vector or expression plasmids encoding Wnt1 (B); Wnt3 (C); Wnt1 and LRP6, Wnt3 and LRP6 (D); DVL2 (E); and β-catenin (F). (G) The SuperTopFlash reporter gene was transfected into HEK293T cells, after which the cells were treated with control or Wnt3A conditioned medium (Wnt3A-CM). (H) HEK293T cells were transfected with an AP1-Luc reporter and empty vector or a constitutively active Rasv12 expression plasmid. (I) HEK293T cells were transfected with a NFAT-Luc reporter and empty vector or an expression plasmid for NFATc. The transfected cells were incubated with vehicle or prodigiosin (25–500 nM) for 24 h. The luciferase values were normalized to β-gal activities.[1].Wang Z, et al. Prodigiosin inhibits Wnt/β-catenin signaling and exerts anticancer activity in breast cancer cells. Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13150-13155.
  • Prodigiosin inhibits the Wnt/β-catenin signaling pathway in HEK293T cells. (A) HEK293T cells were transfected with Wnt1 expression plasmid. Then cells were treated with the indicated amounts of prodigiosin for 24 h. Phosphorylated LRP6 and total LRP6 were detected by immunoblotting. (B) Transfection conditions were as in A. HEK293T cells were treated with the indicated amounts of prodigiosin for 24 h. DVL2, active β-catenin, and total β-catenin were detected by immunoblotting. The phosphorylated DVL2 showed slower mobility following SDS/PAGE. (C) HEK293T cells were treated with the indicated amounts of prodigiosin for 24 h. Ser9 phosphorylated GSK3β and total GSK3β were detected by immunoblotting.[1].Wang Z, et al. Prodigiosin inhibits Wnt/β-catenin signaling and exerts anticancer activity in breast cancer cells. Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13150-13155.
  • Prodigiosin inhibits the Wnt/β-catenin signaling pathway in breast cancer cells. MDA-MB-231 (A, C, and E) and MDA-MB-468 (B, D, and F) cells were treated with the indicated amounts of prodigiosin for 24 h. (A and B) Phosphorylated LRP6, total LRP6, DVL2, Ser9 phosphorylated GSK3β, total GSK3β, active β-catenin, and total β-catenin were detected by immunoblotting. The slower-migrating band (upper band) represents the phosphorylated DVL2. (C and D) Total RNA was extracted and then reverse-transcribed into cDNA. Prepared cDNA was then subjected to quantitative PCR analysis to detect the mRNA expression of cyclin D1, fibronectin, and LEF1. (E and F) Protein expression of cyclin D1 and LEF1 were detected by immunoblotting.[1].Wang Z, et al. Prodigiosin inhibits Wnt/β-catenin signaling and exerts anticancer activity in breast cancer cells. Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13150-13155.
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