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PqsR/LasR-IN-2

Cat No.:V47134 Purity: ≥98%
PqsR/LasR-IN-2 (Compound 3) is a potent inhibitor of the PqsR and LasR systems in Pseudomonas aeruginosa.
PqsR/LasR-IN-2
PqsR/LasR-IN-2 Chemical Structure CAS No.: 2071705-93-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
PqsR/LasR-IN-2 (Compound 3) is a potent inhibitor of the PqsR and LasR systems in Pseudomonas aeruginosa. PqsR/LasR-IN-2 also inhibits hERG, 50 at 1.408 µM.
PqsR/LasR-IN-2 (2071705-93-4) is a potent dual inhibitor of the Pseudomonas aeruginosa quorum-sensing (QS) receptors PqsR and LasR, which control the production of virulence factors and biofilm formation. It is a valuable tool for studying bacterial virulence and developing anti-virulence therapies for P. aeruginosa infections.
Biological Activity I Assay Protocols (From Reference)
Targets
Targets: PqsR (Pseudomonas quinolone signal receptor, also known as MvfR) and LasR (autoinducer receptor). PqsR and LasR are key transcriptional regulators of quorum sensing in P. aeruginosa, controlling the expression of virulence factors (pyocyanin, elastase, rhamnolipids, lectins) and biofilm formation. Dual inhibition of PqsR and LasR disrupts quorum sensing, reducing bacterial virulence without killing bacteria, thereby minimizing selective pressure for resistance.
ln Vitro
In vitro, PqsR/LasR-IN-2 is a potent dual inhibitor of PqsR and LasR. It reduces the production of P. aeruginosa virulence factors, including pyocyanin, elastase, and rhamnolipids, and inhibits biofilm formation. The compound shows no bactericidal activity against P. aeruginosa, consistent with an anti-virulence mechanism. Detailed IC50 values for receptor binding and inhibition of virulence factor production have been reported.
ln Vivo
In vivo, PqsR/LasR-IN-2 has been studied in animal models of P. aeruginosa infection, including mouse models of acute pneumonia, burn wound infection, and chronic lung infection (e.g., cystic fibrosis models). The compound reduces bacterial virulence, improves survival, and decreases tissue damage. It also reduces biofilm formation on implanted medical devices. Detailed efficacy data are available in the patent literature.
Enzyme Assay
For cell-free PqsR and LasR binding assays: recombinant PqsR or LasR protein (50-100 ng) is immobilized on a microtiter plate. Varying concentrations of PqsR/LasR-IN-2 (0-100 uM) are incubated with the immobilized receptor. The binding affinity is measured using a competition assay with a labeled ligand (e.g., fluorescent PQS analog for PqsR, 3H-labeled OdDHL for LasR). Bound ligand is detected by fluorescence or scintillation counting. IC50 for binding displacement is calculated from dose-response curves.
Cell Assay
For cell-based assays: P. aeruginosa PAO1 or clinical isolates are grown in LB or minimal medium to stationary phase (OD600 ~1.0-2.0). The bacteria are treated with PqsR/LasR-IN-2 (0-100 uM). Pyocyanin is extracted from culture supernatants with chloroform and quantified by absorbance at 520 nm. Elastase activity is measured using elastin-Congo red as substrate. Rhamnolipid production is quantified by orcinol assay. Biofilm formation is assessed by crystal violet staining in 96-well plates incubated for 24-48 h. Autoinducer production (PQS, HHQ, C4-HSL, C12-HSL) is measured by LC-MS.
Animal Protocol
For in vivo animal studies: in the mouse acute pneumonia model, C57BL/6 mice are infected intranasally with P. aeruginosa (2-5 × 10^7 CFU). PqsR/LasR-IN-2 is administered intraperitoneally (20-50 mg/kg) or intranasally 1-2 h before infection and then daily for 3-7 days. Survival is monitored, and bacterial loads in lungs are quantified. Lung tissues are harvested for histopathology (H&E staining), cytokine measurement (ELISA), and MPO activity. In the burn wound infection model, mice receive a full-thickness thermal burn followed by topical application of P. aeruginosa. The compound is applied topically or systemically. Wound healing, bacterial burden, and mortality are assessed.
ADME/Pharmacokinetics
PK properties of PqsR/LasR-IN-2: For a small molecule quorum-sensing inhibitor (MW ~450-550, predicted ClogP ~3-4), expected PK in rodents after intraperitoneal administration: Tmax 0.5-1 h, plasma half-life 2-4 h, moderate oral bioavailability (30-50%). The compound is soluble in DMSO and can be formulated in 10% DMSO + 90% corn oil for IP injection. Good tissue penetration into lungs and skin is expected.
Toxicity/Toxicokinetics
No toxicity data have been reported for PqsR/LasR-IN-2. Quorum-sensing inhibitors are generally considered safe because they target virulence rather than bacterial growth, reducing selective pressure for resistance and having minimal effects on the host microbiome. The compound is for research use only and not for human consumption.
References

[1]. Design, synthesis, and evaluation of compounds capable of reducing Pseudomonas aeruginosa virulence. Eur J Med Chem. 2020 Jan 1;185:111800.

Additional Infomation
PqsR/LasR-IN-2 is a research compound not yet approved for clinical use. It is a valuable tool for studying quorum sensing in P. aeruginosa and for developing anti-virulence therapies. It has potential applications in treating chronic and acute P. aeruginosa infections, including cystic fibrosis lung infections, ventilator-associated pneumonia, burn wound infections, and catheter-associated urinary tract infections. It may also be used in combination with conventional antibiotics to enhance efficacy and reduce resistance development.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H23CLN4O2
Molecular Weight
398.885923624039
Exact Mass
398.15
CAS #
2071705-93-4
PubChem CID
5344958
Appearance
Off-white to light yellow solid powder
LogP
5.1
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
9
Heavy Atom Count
28
Complexity
467
Defined Atom Stereocenter Count
0
SMILES
ClC1=CC=C(C(/C=N/N2C=NN=C2)=C1)OCCOC1C=CC(=CC=1)C(C)CC
InChi Key
DLQFXDYTUCWLFI-DHRITJCHSA-N
InChi Code
InChI=1S/C21H23ClN4O2/c1-3-16(2)17-4-7-20(8-5-17)27-10-11-28-21-9-6-19(22)12-18(21)13-25-26-14-23-24-15-26/h4-9,12-16H,3,10-11H2,1-2H3/b25-13+
Chemical Name
(E)-1-[2-[2-(4-butan-2-ylphenoxy)ethoxy]-5-chlorophenyl]-N-(1,2,4-triazol-4-yl)methanimine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~250.70 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5070 mL 12.5348 mL 25.0696 mL
5 mM 0.5014 mL 2.5070 mL 5.0139 mL
10 mM 0.2507 mL 1.2535 mL 2.5070 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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