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Pirlimycin HCl

Alias: Pirsue Pirlimycin hydrochloride Pirlimycin HCl U 57930E U-57930E U57930E
Cat No.:V18458 Purity: ≥98%
Pirlimycin(Pirsue) HCl is a lincosamide class of antibiotic that is active against Gram-positive bacteria such as Staphylococcus, Streptococcus, Bacteroides, and Plasmodium.
Pirlimycin HCl
Pirlimycin HCl Chemical Structure CAS No.: 78822-40-9
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price
2mg
Other Sizes

Other Forms of Pirlimycin HCl:

  • Pirlimycin (Pirsue)
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
Pirlimycin (Pirsue) HCl is a lincosamide class of antibiotic that is active against Gram-positive bacteria such as Staphylococcus, Streptococcus, Bacteroides, and Plasmodium. It has no activity against Gram-negative bacteria. Pirlimycin inhibits bacterial protein synthesis by binding to the 50S subunit of the ribosome. Pirlimycin has been used by veterinarians in the treatment of mastitis in dairy cattle.
Pirlimycin Hydrochloride is a lincosamide antibiotic that is active against Gram-positive bacteria. It inhibits bacterial protein synthesis by binding to the 50S subunit of the ribosome. The compound is active against Gram-positive bacteria including Staphylococcus, Streptococcus, and anaerobic bacteria, but has no activity against Gram-negative bacteria. Pirlimycin is used in veterinary medicine for the treatment of mastitis in dairy cattle.
Biological Activity I Assay Protocols (From Reference)
Targets
Pirlimycin targets the bacterial ribosome, specifically the 50S subunit, where it binds and inhibits protein synthesis. By binding to the 23S ribosomal RNA, it blocks the peptidyl transferase reaction, preventing the elongation of the polypeptide chain. This results in the inhibition of bacterial protein synthesis and ultimately bacterial cell death. Pirlimycin is bacteriostatic rather than bactericidal.
ln Vitro
In vitro, Pirlimycin demonstrates potent antibacterial activity against Gram-positive bacteria including Staphylococcus aureus, Streptococcus species, and anaerobic bacteria. It has no activity against Gram-negative bacteria due to the inability to penetrate the outer membrane. The compound shows activity against protozoa such as Plasmodium. Minimum inhibitory concentrations (MICs) for susceptible organisms are in the low microgram per milliliter range. Detailed in vitro susceptibility data are available from published studies.
ln Vivo
In vivo, Pirlimycin is used in veterinary medicine for the treatment of mastitis in dairy cattle. It is administered as an intramammary infusion (Pirsue® aqueous gel) for the treatment of bovine mastitis. The compound effectively eliminates susceptible Gram-positive bacteria from the mammary gland, resolving the infection and restoring milk quality. It is not used in human medicine.
Enzyme Assay
In vitro susceptibility testing for antibiotics typically uses broth microdilution or agar dilution methods according to CLSI guidelines. Bacterial cultures are prepared at a standardized inoculum (e.g., 5 × 10⁵ CFU/mL) and incubated with varying concentrations of Pirlimycin in 96-well plates or on agar plates. Minimum inhibitory concentrations (MICs) are determined as the lowest concentration that inhibits visible bacterial growth after 18-24 hours of incubation. Quality control strains are included to ensure assay validity.
Cell Assay
Cellular assays for antibiotics typically involve bacterial cell culture rather than mammalian cell culture. Bacteria are grown in appropriate media and treated with varying concentrations of Pirlimycin. Bacterial growth is monitored by measuring optical density (OD600) over time to generate growth curves. The compound's effect on bacterial protein synthesis can be assessed by measuring incorporation of radiolabeled amino acids (e.g., [³H]leucine) into newly synthesized proteins. Time-kill assays are performed to determine whether the compound is bacteriostatic or bactericidal.
Animal Protocol
In vivo animal studies for mastitis treatment typically use dairy cows with experimentally induced or naturally occurring mastitis. Pirlimycin is administered as an intramammary infusion according to the approved dosing regimen. Milk samples are collected before and after treatment for bacterial culture and somatic cell count. Clinical signs of mastitis (e.g., udder swelling, milk appearance) are monitored. The cure rate and time to resolution of infection are determined.
ADME/Pharmacokinetics
Pirlimycin is administered as an intramammary infusion for the treatment of bovine mastitis. Systemic absorption following intramammary administration is minimal, resulting in low systemic exposure and favorable safety. The compound is primarily eliminated in milk. Following systemic administration (if used), it would be metabolized in the liver and excreted via the kidneys and bile. Detailed PK parameters in cattle are available from veterinary pharmacology studies.
Toxicity/Toxicokinetics
Pirlimycin is generally well-tolerated in dairy cattle when administered as an intramammary infusion. Local reactions at the infusion site are rare. Systemic toxicity is minimal due to low absorption. The compound is not used in humans, so human toxicity data are limited. Withdrawal times are established to ensure that milk from treated cows does not contain antibiotic residues above regulatory limits.
References
Kulesza SB, Maguire RO, Xia K, Cushman J, Knowlton K, Ray P. Manure Injection Affects the Fate of Pirlimycin in Surface Runoff and Soil. J Environ Qual. 2016 Mar;45(2):511-8. doi: 10.2134/jeq2015.06.0266. PubMed PMID: 27065398.
Additional Infomation
Pirlimycin hydrochloride is the hydrochloride salt form of clindamycin, a derivative of clindamycin in which a six-membered ring replaces the five-membered ring of clindamycin. Compared to clindamycin, Pirlimycin has higher activity against Gram-positive bacteria, including Staphylococcus aureus, coagulase-negative staphylococci, and streptococci. This drug is primarily used to treat bovine mastitis.
See also: Pirlimycin hydrochloride (note moved here).
Indications
For the treatment of subclinical mastitis in lactating cows caused by Gram-positive cocci sensitive to Pirlimycin (including Staphylococcus aureus, whether penicillinase-positive or negative, and coagulase-negative staphylococci); streptococcal organisms include agalactiae, dysgalactiae, and mammary streptococci.
Pirlimycin Hydrochloride is a lincosamide antibiotic active against Gram-positive bacteria. It inhibits bacterial protein synthesis by binding to the 50S ribosomal subunit. The compound is active against Staphylococcus, Streptococcus, and anaerobic bacteria, but not against Gram-negative organisms. It is used in veterinary medicine as Pirsue® for the treatment of mastitis in dairy cattle. Pirlimycin is available for research use only in human applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H33CL3N2O5S
Molecular Weight
447.41738
Exact Mass
464.151
CAS #
78822-40-9
Related CAS #
Pirlimycin;79548-73-5
PubChem CID
115329
Appearance
White to off-white solid powder
Melting Point
>160 °C (dec.) (lit.)
LogP
1.569
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
6
Heavy Atom Count
27
Complexity
474
Defined Atom Stereocenter Count
9
SMILES
CCC1CCNC(C1)C(=O)NC(C2C(C(C(C(O2)SC)O)O)O)C(C)Cl.Cl
InChi Key
WOOZGIRLEZDLSO-RWMVMHIMSA-N
InChi Code
InChI=1S/C17H31ClN2O5S.2ClH/c1-4-9-5-6-19-10(7-9)16(24)20-11(8(2)18)15-13(22)12(21)14(23)17(25-15)26-3/h8-15,17,19,21-23H,4-7H2,1-3H3,(H,20,24)2*1H/t8-,9+,10-,11+,12-,13+,14+,15+,17+/m0../s1
Chemical Name
(2S,4R)-N-((1S,2S)-2-chloro-1-((2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(methylthio)tetrahydro-2H-pyran-2-yl)propyl)-4-ethylpiperidine-2-carboxamide dihydrochloride
Synonyms
Pirsue Pirlimycin hydrochloride Pirlimycin HCl U 57930E U-57930E U57930E
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2350 mL 11.1752 mL 22.3504 mL
5 mM 0.4470 mL 2.2350 mL 4.4701 mL
10 mM 0.2235 mL 1.1175 mL 2.2350 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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