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Phenosafranine

Cat No.:V44205 Purity: ≥98%
Phenosafranine is a phenazine dye.
Phenosafranine
Phenosafranine Chemical Structure CAS No.: 81-93-6
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5g
10g
25g
Other Sizes
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Product Description
Phenosafranine is a phenazine dye. Phenosafranine has a higher binding affinity to triple-stranded RNA than to double-stranded RNA and binds to both RNAs through intercalation. Phenosafranine may be utilized to stain plant cells and measure hemoglobin, dopamine, serotonin, etc.
Phenosafranine is a phenazine dye with a molecular formula of C18H15ClN4 and a molecular weight of 322.79 g/mol. It is an organochlorine salt with a counterion of 3,7-diamino-5-phenylphenazine-5-onium. The compound appears as green crystals and is soluble in water and alcohol, producing a purple-red solution with a green-yellow fluorescence. Phenosafranine is used to stain Gram-negative bacteria red and to distinguish living from dead cells.
Biological Activity I Assay Protocols (From Reference)
Targets
Phenosafranine does not have a specific biological target. It is a cationic dye that binds to nucleic acids and other cellular components. It has a high binding affinity to triplex RNA compared to duplex RNA, binding through intercalation to both forms. It is used as a fluorescent dye, histological dye, and photosensitizer. Its ability to distinguish living from dead cells is based on its differential uptake by cells with compromised membranes.
ln Vitro
In vitro, Phenosafranine is used for various staining applications. It is used to stain Gram-negative bacteria red to contrast with the blue of Gram-positive bacteria. A 0.1% aqueous solution is taken up by dead or abnormal cells immediately, while living cells remain unstained for at least 30 minutes, allowing for the distinction between living and dead cells. It is also used for staining plant cells and for the determination of hemoglobin, dopamine, and serotonin.
ln Vivo
In vivo applications of Phenosafranine are not typical, as it is primarily used in vitro as a histological and fluorescent dye. It is not administered to living organisms for therapeutic or diagnostic purposes. Its use is confined to laboratory research settings.
Enzyme Assay
A cell-free assay for Phenosafranine is not applicable as it is not an enzyme inhibitor. Its properties as a dye are characterized by spectroscopic methods. Its binding to RNA and DNA can be assessed in cell-free systems by measuring changes in fluorescence or absorbance.
Cell Assay
Cellular experiments with Phenosafranine typically involve staining cells for microscopy or flow cytometry. Cells are incubated with the dye, and its uptake and fluorescence are visualized. The dye's ability to distinguish living from dead cells is used in viability assays.
Animal Protocol
In vivo animal experiments for Phenosafranine are not applicable, as it is a dye used in vitro and ex vivo on cells and tissue sections.
ADME/Pharmacokinetics
Phenosafranine has a molecular formula of C18H15ClN4 and a molecular weight of 322.79 g/mol. Its CAS number is 81-93-6. The compound has a melting point of >300°C. Specific pharmacokinetic properties are not applicable as it is not a therapeutic drug. For storage, it should be kept in a cool, dry place, protected from light.
Toxicity/Toxicokinetics
Toxicity data for Phenosafranine are not provided in the available sources. As a dye, it should be handled with appropriate safety precautions. It is intended for research use only and is not for human consumption.
References

[1]. Widholm JM. The use of fluorescein diacetate and phenosafranine for determining viability of cultured plant cells. Stain Technol. 1972 Jul;47(4):189-94.

[2]. Characterization of Phenosafranine–Hemoglobin Interactions in Aqueous Solution. J Solution Chem 40, 231–246 (2011).

[3]. An overview on the interaction of phenazinium dye phenosafranine to RNA triple and double helices. Int J Biol Macromol. 2016 May;86:345-51.

Additional Infomation
Phenosafranine is an organochlorine salt with a counterion of 3,7-diamino-5-phenylphenazine-5-onium. It is commonly used to stain Gram-negative bacteria red to contrast with the blue of Gram-positive bacteria. It can be used as a fluorescent dye, histological dye, and photosensitizer. Its molecular structure contains 3,7-diamino-5-phenylphenazine-5-onium.
Phenosafranine (CAS: 81-93-6) is a phenazine dye. Its synonyms include Phenosafranin and Basic Red 2. The compound is used as a histological and fluorescent dye, for staining bacteria, and for distinguishing living from dead cells. It is not a therapeutic drug and is strictly for research purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H15CLN4
Molecular Weight
322.7915
Exact Mass
322.098
CAS #
81-93-6
PubChem CID
65732
Appearance
Green to dark green solid powder
Density
1.1738 (rough estimate)
Boiling Point
478.49°C (rough estimate)
Melting Point
300ºC
Index of Refraction
1.6110 (estimate)
LogP
0.995
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
1
Heavy Atom Count
23
Complexity
355
Defined Atom Stereocenter Count
0
InChi Key
SOUHUMACVWVDME-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H14N4.ClH/c19-12-6-8-15-17(10-12)22(14-4-2-1-3-5-14)18-11-13(20)7-9-16(18)21-15;/h1-11H,(H3,19,20);1H
Chemical Name
10-phenylphenazin-10-ium-2,8-diamine;chloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~387.25 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0980 mL 15.4899 mL 30.9799 mL
5 mM 0.6196 mL 3.0980 mL 6.1960 mL
10 mM 0.3098 mL 1.5490 mL 3.0980 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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