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NRP1 antagonist 1

Cat No.:V46252 Purity: ≥98%
NRP1 antagonist 1 (compound 12a) is a potent NRP1 antagonist (inhibitor) with IC50 of 19.1 μM.
NRP1 antagonist 1
NRP1 antagonist 1 Chemical Structure CAS No.: 2569598-01-0
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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5mg
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Product Description
NRP1 antagonist 1 (compound 12a) is a potent NRP1 antagonist (inhibitor) with IC50 of 19.1 μM. NRP1 antagonist 1 has potential usefulness in cancer-related research.
NRP1 antagonist 1 (compound 12a) is a potent, non-peptide small molecule antagonist of Neuropilin-1 (NRP1). It is designed to block the VEGF-NRP1 interaction, thereby exhibiting anti-tumor potential in cancer research by disrupting angiogenesis and tumor growth pathways.
Biological Activity I Assay Protocols (From Reference)
Targets
NRP1 antagonist 1 selectively targets Neuropilin-1 (NRP1), a transmembrane co-receptor for VEGF-A165 and semaphorins. NRP1 is involved in tumor angiogenesis, progression, and immune regulation. The antagonist blocks the binding of VEGF to NRP1, inhibiting downstream signaling.
ln Vitro
NRP1 antagonist 1 demonstrates potent inhibition with an IC50 of 19.1 microM in binding assays. This activity effectively blocks the VEGF-NRP interaction, which is crucial for pathological angiogenesis in cancer. It exhibits non-peptide structural characteristics, offering advantages for potential oral bioavailability.
ln Vivo
Dedicated in vivo efficacy studies for NRP1 antagonist 1 are not extensively documented in standard profiles. As a research tool for NRP1, it has shown potential in reducing angiogenesis in preclinical models, but detailed animal study data are not widely available.
Enzyme Assay
The binding affinity of NRP1 antagonist 1 to the b1 domain of NRP1 is measured using a competitive ELISA or Surface Plasmon Resonance (SPR). The compound is incubated with immobilized NRP1 protein and a labeled VEGF-A165 ligand. The IC50 is calculated based on inhibition of the ligand-receptor interaction.
Cell Assay
Endothelial cells (e.g., HUVECs) are cultured and treated with NRP1 antagonist 1 in the presence of VEGF-A165. Functional angiogenesis assays such as cell migration (wound healing) and tube formation on Matrigel are performed. Inhibition of these processes confirms functional antagonism.
Animal Protocol
Dedicated in vivo protocols for NRP1 antagonist 1 are not well-documented. A standard protocol for a related NRP1 antagonist would involve subcutaneous xenograft tumor models in nude mice. The compound would be administered via intraperitoneal injection. Tumor growth and microvessel density would be monitored.
ADME/Pharmacokinetics
Detailed PK parameters for NRP1 antagonist 1 are not extensively documented. As a non-peptide small molecule with a molecular weight of 450.58 g/mol, it may exhibit improved stability and permeability compared to peptide-based NRP1 antagonists, but comprehensive ADME data are not publicly reported.
Toxicity/Toxicokinetics
Toxicological data for NRP1 antagonist 1 are not available in standard profiles. As a research chemical not intended for clinical development, comprehensive toxicology studies have not been performed. Standard laboratory safety precautions apply.
References

[1]. Discovery of novel nonpeptide small-molecule NRP1 antagonists: Virtual screening, molecular simulation and structural modification. Bioorg Med Chem. 2020 Jan 1;28(1):115183.

Additional Infomation
NRP1 antagonist 1 is identified as compound 12a and is classified as a non-peptide antagonist, which is an advantage over peptide-based agents for potential therapeutic development. It is strictly a research tool for studying Neuropilin-1 biology in cancer and angiogenesis.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H22N6OS2
Molecular Weight
450.579680919647
Exact Mass
450.129
CAS #
2569598-01-0
PubChem CID
156017804
Appearance
White to off-white solid powder
LogP
4.8
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
7
Heavy Atom Count
31
Complexity
590
Defined Atom Stereocenter Count
0
SMILES
C(NC1=NN=C(CC)S1)(=O)CSC1N(C2=CC=CC(C)=C2)C(C2=CC=C(C)C=C2)=NN=1
InChi Key
OWXHHEPYWMHKHC-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H22N6OS2/c1-4-19-24-26-21(31-19)23-18(29)13-30-22-27-25-20(16-10-8-14(2)9-11-16)28(22)17-7-5-6-15(3)12-17/h5-12H,4,13H2,1-3H3,(H,23,26,29)
Chemical Name
N-(5-ethyl-1,3,4-thiadiazol-2-yl)-2-[[4-(3-methylphenyl)-5-(4-methylphenyl)-1,2,4-triazol-3-yl]sulfanyl]acetamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~83.33 mg/mL (~184.94 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2194 mL 11.0968 mL 22.1936 mL
5 mM 0.4439 mL 2.2194 mL 4.4387 mL
10 mM 0.2219 mL 1.1097 mL 2.2194 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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