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MMP2-IN-3

Cat No.:V46157 Purity: ≥98%
MMP2-IN-3 (Compound 2) is a potent MMP-2 (matrix metalloproteinase) inhibitor (antagonist) with IC50 of 31 μM.
MMP2-IN-3
MMP2-IN-3 Chemical Structure CAS No.: 897799-81-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
MMP2-IN-3 (Compound 2) is a potent MMP-2 (matrix metalloproteinase) inhibitor (antagonist) with IC50 of 31 μM. MMP2-IN-3 also showed inhibitory activity against MMP-9 and MMP-8, with IC50s of 26.6 and 32 μM, respectively.
MMP2-IN-3 (CAS 897799-81-4, compound 2) is a potent matrix metalloproteinase (MMP) inhibitor. It has a molecular formula of C23H21N3O and a molecular weight of 355.43. The compound inhibits MMP-2 with an IC50 of 31 μM, MMP-9 with an IC50 of 26.6 μM, and MMP-8 with an IC50 of 32 μM. It has potential applications in anti-cancer therapy.
Biological Activity I Assay Protocols (From Reference)
Targets
MMP2-IN-3 targets matrix metalloproteinases (MMPs), specifically MMP-2, MMP-8, MMP-9, and MMP-13. It has IC50 values of 31 μM for MMP-2, 32 μM for MMP-8, 26.6 μM for MMP-9, and >100,000 nM for MMP-13. By targeting MMP-2, the compound helps suppress cancer cell metastasis and tumor progression.
ln Vitro
In vitro, MMP2-IN-3 inhibits MMP-2 with an IC50 of 31 μM, MMP-9 with an IC50 of 26.6 μM, and MMP-8 with an IC50 of 32 μM. It also shows inhibitory activity against MMP-13 with an IC50 greater than 100,000 nM. The compound's activity is characterized by its ability to inhibit multiple MMPs.
ln Vivo
In vivo, MMP2-IN-3 is expected to show efficacy in animal models of cancer by inhibiting MMP activity and suppressing tumor progression and metastasis. It may also have therapeutic applications in fibrotic and cardiovascular diseases. However, specific in vivo efficacy data are not extensively reported.
Enzyme Assay
In vitro enzyme assays for MMP2-IN-3 involve protease activity assays using purified recombinant MMP enzymes. The compound is incubated with the enzyme and a specific fluorogenic substrate. The inhibition of substrate cleavage is measured, and IC50 values are determined from dose-response curves.
Cell Assay
In vitro cellular assays for MMP2-IN-3 are performed using cancer cell lines to assess its effects on cell invasion and metastasis. Cells are treated with various concentrations of the compound, and cell invasion is assessed using transwell or Matrigel invasion assays.
Animal Protocol
In vivo animal studies with MMP2-IN-3 would typically be conducted in mouse models of cancer or fibrosis to evaluate its efficacy. The compound would be administered, and tumor growth, metastasis, or tissue fibrosis would be assessed. However, specific protocols are not detailed.
ADME/Pharmacokinetics
The pharmacokinetic properties of MMP2-IN-3 are not extensively reported. It has a molecular weight of 355.43. Specific parameters such as oral bioavailability, half-life, and tissue distribution are not detailed.
Toxicity/Toxicokinetics
The toxicity profile of MMP2-IN-3 is not extensively reported. As a research compound, it is for research use only and not for human therapeutic use. No specific toxicity data are detailed.
References

[1]. Virtual screening identification and chemical optimization of substituted 2-arylbenzimidazoles as new non-zinc-binding MMP-2 inhibitors. Bioorg Med Chem. 2020 Feb 1;28(3):115257.

Additional Infomation
MMP2-IN-3 (CAS 897799-81-4, compound 2) is a potent MMP inhibitor with IC50 values of 31 μM (MMP-2), 26.6 μM (MMP-9), and 32 μM (MMP-8). It has potential applications in anti-cancer, fibrotic, and cardiovascular disease research. The compound is available for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H21N3O
Molecular Weight
355.43
Exact Mass
355.168
CAS #
897799-81-4
PubChem CID
50754769
Appearance
Off-white to light yellow solid powder
LogP
4.6
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
5
Heavy Atom Count
27
Complexity
490
Defined Atom Stereocenter Count
0
SMILES
C1(CCC(NC2=CC=CC(C3NC4=CC(C)=CC=C4N=3)=C2)=O)=CC=CC=C1
InChi Key
BCWAEMAJIICXQI-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H21N3O/c1-16-10-12-20-21(14-16)26-23(25-20)18-8-5-9-19(15-18)24-22(27)13-11-17-6-3-2-4-7-17/h2-10,12,14-15H,11,13H2,1H3,(H,24,27)(H,25,26)
Chemical Name
N-[3-(6-methyl-1H-benzimidazol-2-yl)phenyl]-3-phenylpropanamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~281.35 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8135 mL 14.0675 mL 28.1349 mL
5 mM 0.5627 mL 2.8135 mL 5.6270 mL
10 mM 0.2813 mL 1.4067 mL 2.8135 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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