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LDN-211904 oxalate

Cat No.:V46239 Purity: ≥98%
LDN-211904 oxalate (compound 32) is a potent and specific EphB3 inhibitor (antagonist) with IC50 of 0.079 µM.
LDN-211904 oxalate
LDN-211904 oxalate Chemical Structure CAS No.: 1198408-78-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
LDN-211904 oxalate (compound 32) is a potent and specific EphB3 inhibitor (antagonist) with IC50 of 0.079 µM. LDN-211904 oxalate displays good metabolic stability in mouse liver microsomes. LDN-211904 oxalate in combination with cetuximab effectively inhibits STAT3-activated CSC stemness and cetuximab resistance in CRC.
LDN-211904 oxalate is a potent and selective EphB3 inhibitor with an IC50 of 0.079 microM. It belongs to the small molecule inhibitor class, primarily studied for its antitumor activity and ability to overcome drug resistance, especially in colorectal cancer models. It is a research-grade chemical.
Biological Activity I Assay Protocols (From Reference)
Targets
LDN-211904 oxalate selectively targets EphB3 (Erythropoietin-producing hepatocellular carcinoma B3), a receptor tyrosine kinase involved in cell migration, adhesion, and tumor progression. The compound shows good selectivity for EphB3 based on profiling against a panel of 288 kinases.
ln Vitro
LDN-211904 oxalate potently inhibits EphB3 with an IC50 of 0.079 microM. It shows good metabolic stability in mouse liver microsomes. The combination of LDN-211904 oxalate with cetuximab is effective in inhibiting STAT3-activated cancer stem cell stemness and overcoming cetuximab resistance in colorectal cancer.
ln Vivo
In vivo, LDN-211904 oxalate is administered at 0.1 mg/kg by intraperitoneal injection three times weekly for 21 days. This regimen inhibits and overcomes acquired cetuximab resistance in tumor xenograft models, demonstrating antitumor efficacy when combined with cetuximab.
Enzyme Assay
The inhibitory activity against EphB3 is measured using an in vitro kinase assay with recombinant EphB3 enzyme and a peptide substrate. The phosphorylation level is quantified using a luminescence-based method. The IC50 is calculated by plotting inhibition percentage against varying compound concentrations.
Cell Assay
Colorectal cancer cell lines (e.g., cetuximab-resistant cells) are cultured and treated with varying concentrations of LDN-211904 oxalate. Cell viability is measured by MTT or CellTiter-Glo assays. Cancer stem cell markers and STAT3 activation are assessed by Western blot.
Animal Protocol
A tumor xenograft model is established in immunodeficient mice. Cetuximab-resistant tumor cells are implanted subcutaneously. Once tumors reach a certain size, mice are administered LDN-211904 oxalate via intraperitoneal injection (0.1 mg/kg, three times weekly for 21 days). Tumor volumes are measured regularly.
ADME/Pharmacokinetics
LDN-211904 oxalate demonstrates good metabolic stability in mouse liver microsomes, suggesting favorable hepatic clearance characteristics. Detailed PK parameters such as half-life, oral bioavailability, and plasma protein binding are not extensively reported in standard profiles.
Toxicity/Toxicokinetics
Detailed toxicological studies for LDN-211904 oxalate are not extensively documented in standard profiles. As a research-grade compound, comprehensive acute and sub-chronic toxicity evaluations have not been publicly reported. Standard laboratory safety precautions apply.
References

[1]. Structure-activity relationship study of EphB3 receptor tyrosine kinase inhibitors. Bioorg Med Chem Lett. 2009 Nov 1;19(21):6122-6.

[2]. Sonic hedgehog pathway activation is associated with cetuximab resistance and EPHB3 receptor induction in colorectal cancer. Theranostics. 2019 Apr 12;9(8):2235-2251.

Additional Infomation
LDN-211904 oxalate is identified as compound 32 in the original research. It is strictly for research use and is not an approved drug. Its ability to target EphB3 makes it a valuable tool for studying tyrosine kinase signaling, cancer stem cell biology, and acquired resistance mechanisms.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H21CLN4O5
Molecular Weight
444.868243932724
Exact Mass
444.12
CAS #
1198408-78-4
PubChem CID
46882744
Appearance
White to off-white solid powder
LogP
3.264
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
4
Heavy Atom Count
31
Complexity
542
Defined Atom Stereocenter Count
0
SMILES
C1CNCCC1C2=CN3C(=NC=C3C(=O)NC4=CC=CC=C4Cl)C=C2.C(=O)(C(=O)O)O
InChi Key
ODBJGLKPAQMCJA-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H19ClN4O.C2H2O4/c20-15-3-1-2-4-16(15)23-19(25)17-11-22-18-6-5-14(12-24(17)18)13-7-9-21-10-8-13;3-1(4)2(5)6/h1-6,11-13,21H,7-10H2,(H,23,25);(H,3,4)(H,5,6)
Chemical Name
N-(2-chlorophenyl)-6-piperidin-4-ylimidazo[1,2-a]pyridine-3-carboxamide;oxalic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2478 mL 11.2392 mL 22.4785 mL
5 mM 0.4496 mL 2.2478 mL 4.4957 mL
10 mM 0.2248 mL 1.1239 mL 2.2478 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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