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KS-106

Cat No.:V47327 Purity: ≥98%
KS106 is a potent ALDH inhibitor (antagonist) with IC50s of 334, 2137 and 360 nM for ALDH1A1, ALDH2 and ALDH3A1 respectively.
KS-106
KS-106 Chemical Structure CAS No.: 2408477-50-7
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
10mg
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Product Description
KS106 is a potent ALDH inhibitor (antagonist) with IC50s of 334, 2137 and 360 nM for ALDH1A1, ALDH2 and ALDH3A1 respectively. KS106 has anti-proliferation and anti-cancer effects with low toxicity. KS106 significantly increases ROS activity, lipid peroxidation, and accumulation of toxic aldehydes. KS106 causes apoptosis and cell cycle arrest in the G2/M phase.
KS-106 (2408477-50-7) is a potent and selective aldehyde dehydrogenase (ALDH) inhibitor with antiproliferative and anticancer activities. It inhibits ALDH1A1, ALDH2, and ALDH3A1 with IC50 values of 334 nM, 2137 nM, and 360 nM respectively. KS-106 induces apoptosis, increases ROS activity, lipid peroxidation, and toxic aldehyde accumulation, and can be used to study melanoma and colon cancer.
Biological Activity I Assay Protocols (From Reference)
Targets
Target: Aldehyde Dehydrogenase (ALDH) isoforms including ALDH1A1 (IC50=334 nM), ALDH2 (IC50=2137 nM), and ALDH3A1 (IC50=360 nM). ALDH enzymes play critical roles in the oxidation of aldehydes, cancer stem cell biology, and drug resistance. Inhibition of ALDH by KS-106 leads to accumulation of toxic aldehydes, increased reactive oxygen species (ROS) activity, and lipid peroxidation, ultimately inducing apoptosis and cell cycle arrest.
ln Vitro
Compound 3h, KS106, has antiproliferative action against UACC 903, 1205 Lu, HCT116, HT29, NCIH929, U266, RPMI8226, MM.1R, MM.1S, and FF2441 cells with IC50 values of 5.7, 5.7, 5.7, 4.9, 1.5, 2.6, 1.6, 1.7, 2.2, and 20.7 µM, respectively [1]. In the G2/M phase, apoptosis and cell cycle arrest are induced by KS106 (5 µM, 24 hours) [1].
In vitro, KS-106 (compound 3h) shows antiproliferative activity against UACC 903, 1205 Lu, HCT116, HT29, NCIH929, U266, RPMI8226, MM.1R, MM.1S, and FF2441 cells with IC50 values of 5.7, 5.7, 5.7, 4.9, 1.5, 2.6, 1.6, 1.7, 2.2, and 20.7 uM respectively. KS-106 (5 uM, 24 h) induces apoptosis and cell cycle arrest at the G2/M phase in HCT116 and HT29 cells. It significantly increases ROS activity, lipid peroxidation, and toxic aldehyde accumulation.
ln Vivo
No specific in vivo efficacy data have been reported for KS-106 in animal models. Based on its in vitro antiproliferative and pro-apoptotic effects, it may have potential for in vivo studies in xenograft mouse models of melanoma and colon cancer. Detailed animal studies have not been published.
Enzyme Assay
For cell-free ALDH enzyme inhibition assays: recombinant ALDH1A1, ALDH2, or ALDH3A1 enzymes (50-100 ng) are incubated with varying concentrations of KS-106 (0-100 uM), NAD+ (1-2 mM), and a fluorogenic aldehyde substrate (e.g., benzaldehyde or acetaldehyde derivative) in assay buffer at 37degC for 30-60 min. Fluorescence is measured (excitation 340 nm, emission 460 nm) for NADH detection. IC50 values for ALDH1A1 (334 nM), ALDH2 (2137 nM), and ALDH3A1 (360 nM) are calculated from dose-response curves.
Cell Assay
Apoptosis analysis[1]
Cell Types: HCT116, HT29 Cell
Tested Concentrations: 5 µM
Incubation Duration: 24 hrs (hours)
Experimental Results: Induction of apoptosis.

Cell cycle analysis[1]
Cell Types: HCT116 Cell
Tested Concentrations: 5 µM
Incubation Duration: 24 hrs (hours)
Experimental Results: Induced cell cycle arrest in G2/M phase.
For cell-based assays: colon cancer cell lines HCT116 and HT29 are seeded in 96-well plates and treated with KS-106 (0-100 uM, 72 h). Cell viability is measured by MTT or CellTiter-Glo assay to determine IC50 values. For apoptosis analysis, cells are treated with KS-106 (5 uM, 24 h), and apoptosis is assessed by Annexin V/PI flow cytometry. Cell cycle distribution is analyzed by propidium iodide staining and flow cytometry to detect G2/M arrest. ROS activity is measured by DCFH-DA fluorescence. Lipid peroxidation is assessed using MDA assay kits.
Animal Protocol
No in vivo animal studies have been reported for KS-106. A potential protocol for future studies would involve xenograft mouse models bearing HCT116 colon cancer cells or melanoma cell lines. KS-106 would be formulated in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% saline and administered intraperitoneally at doses of 10-50 mg/kg daily for 2-3 weeks. Tumor volume would be measured by calipers, and tumor tissues harvested for analysis of ALDH activity, ROS levels, and apoptosis markers.
ADME/Pharmacokinetics
No PK data are available for KS-106. For a small molecule ALDH inhibitor (MW 474.3, solubility in DMSO 100 mg/mL), predicted PK in rodents after IP administration: Tmax 0.5-1 h, plasma half-life 2-4 h. The compound is soluble in DMSO and can be formulated in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% saline for in vivo studies. Oral bioavailability is unknown.
Toxicity/Toxicokinetics
No toxicity data have been reported for KS-106. In vitro studies indicate low toxicity against normal cells at effective concentrations. ALDH inhibition may cause accumulation of toxic aldehydes, potentially leading to cellular stress, but no acute toxicity studies have been published. The compound is for research use only and not for human consumption.
References

[1]. Design, synthesis characterization and biological evaluation of novel multi-isoform ALDH inhibitors as potential anticancer agents. Eur J Med Chem. 2020 Feb 1;187:111962.

Additional Infomation
KS-106 is a research compound not yet approved for clinical use. It is a valuable tool for studying ALDH biology in cancer, particularly in melanoma and colon cancer, and for investigating the role of ALDH isoforms in cancer stem cell maintenance and drug resistance. It may be used in combination with chemotherapeutic agents to overcome ALDH-mediated resistance. The compound is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H15BRF3N3O2S
Molecular Weight
474.29
Exact Mass
473.002
CAS #
2408477-50-7
PubChem CID
155235342
Appearance
Light yellow to yellow solid powder
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
5
Heavy Atom Count
28
Complexity
605
Defined Atom Stereocenter Count
0
SMILES
C(F)(F)(F)C1C=CC2=C(C(C(N2CC2=CC=C(C=C2)CSC(N)=N)=O)=O)C=1.Br
InChi Key
AHVSKNDQJSDEMD-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H14F3N3O2S.BrH/c19-18(20,21)12-5-6-14-13(7-12)15(25)16(26)24(14)8-10-1-3-11(4-2-10)9-27-17(22)23;/h1-7H,8-9H2,(H3,22,23);1H
Chemical Name
[4-[[2,3-dioxo-5-(trifluoromethyl)indol-1-yl]methyl]phenyl]methyl carbamimidothioate;hydrobromide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~210.84 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1084 mL 10.5421 mL 21.0841 mL
5 mM 0.4217 mL 2.1084 mL 4.2168 mL
10 mM 0.2108 mL 1.0542 mL 2.1084 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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