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Heptasaccharide Glc4Xyl3

Cat No.:V33562 Purity: ≥98%
Heptasaccharide Glc4Xyl3 is a covalent/irreversible inhibitor of endogenous xyloglucan and is used to identify and analyze multiple xyloglucan-active enzymes in nature.
Heptasaccharide Glc4Xyl3
Heptasaccharide Glc4Xyl3 Chemical Structure CAS No.: 121591-98-8
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
100mg
Other Sizes
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Product Description
Heptasaccharide Glc4Xyl3 is a covalent/irreversible inhibitor of endogenous xyloglucan and is used to identify and analyze multiple xyloglucan-active enzymes in nature.
Heptasaccharide Glc4Xyl3 (CAS#: 121591-98-8), also known as XXXG or Xyloglucan Heptasaccharide Glc4Xyl3, is a carbohydrate molecule consisting of four glucose (Glc) and three xylose (Xyl) residues. This heptasaccharide has been a subject of scientific research in glycobiology and carbohydrate chemistry. It is used as a substrate or model compound for studying enzyme activities and carbohydrate-binding proteins. Heptasaccharide Glc4Xyl3 is a covalent/irreversible inhibitor of endogenous xyloglucan and is used to identify and analyze multiple xyloglucan-active enzymes in nature.
Biological Activity I Assay Protocols (From Reference)
Targets
Heptasaccharide Glc4Xyl3 targets xyloglucan-active enzymes, specifically endo-xyloglucanases, which hydrolyze xyloglucan polysaccharides. Xyloglucan is a major hemicellulose component of plant cell walls and is involved in cell wall structure and growth. Endo-xyloglucanases cleave the beta-1,4-glucan backbone of xyloglucan, releasing oligosaccharide products including heptasaccharides like Glc4Xyl3. As a covalent/irreversible inhibitor, Heptasaccharide Glc4Xyl3 forms a stable complex with the enzyme active site, preventing substrate hydrolysis. This makes it a valuable tool for identifying and characterizing xyloglucan-active enzymes in nature.
ln Vitro
In vitro, Heptasaccharide Glc4Xyl3 acts as a covalent/irreversible inhibitor of endo-xyloglucanases. The compound binds to the active site of the enzyme, forming a stable covalent adduct that prevents the hydrolysis of xyloglucan substrates. This inhibition allows researchers to identify and analyze multiple xyloglucan-active enzymes in complex mixtures. The heptasaccharide is also used as a substrate for studying the catalytic mechanism and substrate specificity of glycoside hydrolases. In enzyme kinetics assays, Heptasaccharide Glc4Xyl3 can be used as a substrate to measure enzyme activity and determine kinetic parameters.
ln Vivo
In vivo, Heptasaccharide Glc4Xyl3 is used as a research tool to study xyloglucan metabolism and plant cell wall biology. The compound is not a therapeutic agent but rather a biochemical tool for studying enzyme activities in plant and microbial systems. As an inhibitor of endo-xyloglucanases, Heptasaccharide Glc4Xyl3 can be used to probe the role of these enzymes in plant growth, development, and stress responses. However, specific in vivo data for this compound are limited in publicly available sources. The compound is intended for research use only.
Enzyme Assay
In vitro enzyme assays for Heptasaccharide Glc4Xyl3 involve measuring endo-xyloglucanase activity using xyloglucan or synthetic substrates. The enzyme is incubated with Heptasaccharide Glc4Xyl3 as a substrate or inhibitor in assay buffer at 37degC for 30-60 minutes. For substrate assays, the release of reducing sugars is measured using the Nelson-Somogyi or DNS method. For inhibition assays, the compound is pre-incubated with the enzyme before adding the xyloglucan substrate, and residual activity is measured. Inhibition constants (IC₅0, Ki) are determined from dose-response curves. Product analysis is performed by HPLC or mass spectrometry to identify the cleavage products.
Cell Assay
In vitro cellular assays for Heptasaccharide Glc4Xyl3 are performed using plant cells or tissues to study xyloglucan metabolism. Plant cell cultures (e.g., Arabidopsis, tobacco) are treated with Heptasaccharide Glc4Xyl3 at concentrations of 0.1-100 microM for 1-24 hours. Xyloglucan degradation is assessed by measuring the release of oligosaccharides into the culture medium using HPLC or mass spectrometry. Gene expression of xyloglucan-active enzymes is quantified by qRT-PCR. Cell wall composition is analyzed by monosaccharide analysis. The effects of the compound on plant growth, cell elongation, and stress responses are evaluated. However, specific protocols are not well-documented in publicly available sources.
Animal Protocol
In vivo animal studies for Heptasaccharide Glc4Xyl3 are not typically performed, as the compound is used as a research tool for studying plant carbohydrate metabolism rather than as a therapeutic agent. The compound is not intended for administration to animals or humans. Researchers interested in in vivo applications should consult the primary literature for the most current information. The compound is a biochemical reagent for laboratory use only.
ADME/Pharmacokinetics
Heptasaccharide Glc4Xyl3 (CAS#: 121591-98-8) has molecular formula C3₉H₆₆O33 and molecular weight 1,062.92. It is a xyloglucan heptasaccharide also known as XXXG, consisting of four glucose (Glc) and three xylose (Xyl) residues. The compound is a covalent/irreversible inhibitor of endo-xyloglucanases and is used for the identification and analysis of xyloglucan-active enzymes in nature. Purity is typically >95.0% by HPLC. The compound is a solid and should be stored at room temperature. It is soluble in water and aqueous buffers. The compound is intended for research use only.
References

[1]. Structural and enzymatic characterization of a glycoside hydrolase family 31 α-xylosidase from Cellvibrio japonicus involved in xyloglucan saccharification. Biochem J. 2011 Jun 15;436(3):567-80.

Additional Infomation
Heptasaccharide Glc4Xyl3 (CAS#: 121591-98-8), also known as XXXG or Xyloglucan Heptasaccharide Glc4Xyl3, is a carbohydrate molecule consisting of four glucose (Glc) and three xylose (Xyl) residues. It is used as a substrate or model compound for studying enzyme activities and carbohydrate-binding proteins in glycobiology and carbohydrate chemistry. The compound is a covalent/irreversible inhibitor of endo-xyloglucanases and is used to identify and analyze multiple xyloglucan-active enzymes in nature. It is supplied as a research chemical for laboratory use only. As of the current date, Heptasaccharide Glc4Xyl3 is not approved for any clinical or therapeutic indication.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C39H66O33
Molecular Weight
1062.9216
Exact Mass
1062.35
CAS #
121591-98-8
Appearance
Typically exists as solid at room temperature
Index of Refraction
1.701
SMILES
O(C1([H])C([H])(C([H])(C([H])(C([H])(C([H])([H])OC2([H])C([H])(C([H])(C([H])(C([H])([H])O2)O[H])O[H])O[H])O1)OC1([H])C([H])(C([H])(C([H])(C([H])(C([H])([H])OC2([H])C([H])(C([H])(C([H])(C([H])([H])O2)O[H])O[H])O[H])O1)O[H])O[H])O[H])O[H])O[H])C1([H])C([H])(C([H])([H])OC2([H])C([H])(C([H])(C([H])(C([H])([H])O2)O[H])O[H])O[H])OC([H])(C([H])(C1([H])O[H])O[H])OC1([H])C([H])(C([H])([H])O[H])OC([H])(C([H])(C1([H])O[H])O[H])O[H]
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.9408 mL 4.7040 mL 9.4080 mL
5 mM 0.1882 mL 0.9408 mL 1.8816 mL
10 mM 0.0941 mL 0.4704 mL 0.9408 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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