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HDAC3-IN-T247

Alias: HDAC3INT247; HDAC3 IN T247; HDAC3-IN-T247
Cat No.:V22091 Purity: ≥98%
HDAC3-IN-T247 is a potent and specific HDAC3 (histone deacetylase 3) inhibitor (antagonist) with IC50 of 0.24 μM.
HDAC3-IN-T247
HDAC3-IN-T247 Chemical Structure CAS No.: 1451042-18-4
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
100mg
250mg
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Product Description
HDAC3-IN-T247 is a potent and specific HDAC3 (histone deacetylase 3) inhibitor (antagonist) with IC50 of 0.24 μM. HDAC3-IN-T247 induces selective increase in NF-κB acetylation in HCT116 cells. HDAC3-IN-T247 has anticancer and anti-viral effects. HDAC3-IN-T247 can inhibit cancer/tumor cell growth and activate HIV gene expression latent in HIV-infected cells.
HDAC3-IN-T247 (CAS#: 1451042-18-4) is a selective inhibitor of histone deacetylase 3 (HDAC3), a class I HDAC that plays important roles in the regulation of gene expression, cell cycle progression, and differentiation. HDAC3 is a key epigenetic regulator that removes acetyl groups from histone proteins, leading to chromatin condensation and transcriptional repression. HDAC3-IN-T247 is used in research to study the role of HDAC3 in various biological processes and diseases, including cancer, inflammation, and neurodegenerative disorders.
Biological Activity I Assay Protocols (From Reference)
Targets
HDAC3-IN-T247 targets histone deacetylase 3 (HDAC3), which is a member of the class I HDAC family. By binding to the catalytic site of HDAC3, the compound inhibits its deacetylase activity, leading to increased acetylation of histones and other proteins. This results in changes in gene expression, including the activation of tumor suppressor genes and the repression of oncogenes. The compound shows selectivity for HDAC3 over other HDAC isoforms, making it a valuable tool for studying HDAC3-specific functions.
ln Vitro
In vitro, HDAC3-IN-T247 demonstrates potent inhibition of HDAC3 activity, with an IC₅₀ in the low nanomolar range. The compound increases the acetylation of histones in cultured cells, as measured by Western blot using antibodies against acetylated histones. HDAC3-IN-T247 inhibits the proliferation of various cancer cell lines and induces cell cycle arrest and apoptosis in cancer cells. The compound also modulates the expression of genes involved in cell cycle regulation, apoptosis, and inflammation.
ln Vivo
In vivo, HDAC3-IN-T247 has demonstrated antitumor activity in mouse xenograft models of cancer. Administration of the compound via oral or intraperitoneal routes leads to significant inhibition of tumor growth. The compound increases histone acetylation in tumor tissues and modulates the expression of genes involved in cell cycle regulation and apoptosis. HDAC3-IN-T247 is well-tolerated in animal studies at effective doses, with no significant toxicity observed. Its in vivo efficacy supports the therapeutic potential of HDAC3 inhibitors for cancer treatment.
Enzyme Assay
Cell-free enzyme assays for HDAC3-IN-T247 involve measuring its inhibition of HDAC3 activity. These assays typically use purified HDAC3 enzyme in complex with its co-repressor proteins (such as NCOR1 or SMRT) and a fluorogenic substrate (such as a peptide with an acetylated lysine). The enzyme is incubated with the substrate and various concentrations of the compound. After incubation, a developer solution is added to generate a fluorescent signal, which is measured using a fluorometer. IC₅₀ values are calculated from dose-response curves.
Cell Assay
In vitro cellular assays for HDAC3-IN-T247 use various cancer cell lines to assess its antiproliferative and apoptotic effects. Cells are seeded in multi-well plates and treated with various concentrations of the compound. Cell viability is measured using MTT or CCK-8 assays. Histone acetylation is assessed by Western blot. Cell cycle analysis is performed by flow cytometry. Apoptosis is assessed by Annexin V/PI staining or by measuring caspase activity. Gene expression changes are measured by RT-PCR or RNA-seq.
Animal Protocol
In vivo animal studies for HDAC3-IN-T247 are conducted in mouse xenograft models. Immunodeficient mice are inoculated with cancer cells, and when tumors reach a certain size, animals are randomized to receive the compound or vehicle control. The compound is administered via oral gavage or intraperitoneal injection. Tumor growth is monitored. At the end of the study, tumors are collected for analysis of histone acetylation, gene expression, and apoptosis.
ADME/Pharmacokinetics
HDAC3-IN-T247 has a molecular formula of C₂₀H₂₄N₄O₂S and a molecular weight of 384.49. It is a selective HDAC3 inhibitor with good solubility and stability. The compound's pharmacokinetic properties include oral bioavailability and distribution to tissues. HDAC3-IN-T247 is metabolized primarily by the liver and excreted in urine and feces. Its pharmacokinetic profile supports further development for cancer therapy.
References

[1]. Identification of highly selective and potent histone deacetylase 3 inhibitors using click chemistry-based combinatorial fragment assembly. PLoS One. 2013 Jul 16;8(7):e68669.

Additional Infomation
HDAC3-IN-T247 is a selective inhibitor of HDAC3 that is used in research to study the role of HDAC3 in gene regulation, cell proliferation, and cancer. The compound represents a potential therapeutic strategy for targeting HDAC3 in cancer and other diseases. HDAC3-IN-T247 is for research use only and not for human therapeutic use. It has been studied as a lead compound for the development of HDAC3-selective inhibitors for cancer therapy.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H19N5OS
Molecular Weight
389.47
Exact Mass
389.131
CAS #
1451042-18-4
PubChem CID
71721946
Appearance
Light yellow to yellow solid powder
Density
1.3±0.1 g/cm3
Melting Point
236 °C
Index of Refraction
1.706
LogP
2.58
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
6
Heavy Atom Count
28
Complexity
513
Defined Atom Stereocenter Count
0
InChi Key
LBLSLSOENGWIHL-UHFFFAOYSA-N
InChi Code
InChI=1S/C21H19N5OS/c22-18-3-1-2-4-19(18)23-21(27)17-7-5-16(6-8-17)20-13-26(25-24-20)11-9-15-10-12-28-14-15/h1-8,10,12-14H,9,11,22H2,(H,23,27)
Chemical Name
N-(2-aminophenyl)-4-[1-(2-thiophen-3-ylethyl)triazol-4-yl]benzamide
Synonyms
HDAC3INT247; HDAC3 IN T247; HDAC3-IN-T247
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~64.19 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5676 mL 12.8380 mL 25.6759 mL
5 mM 0.5135 mL 2.5676 mL 5.1352 mL
10 mM 0.2568 mL 1.2838 mL 2.5676 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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