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Ganfeborole (GSK-3036656; GSK-656)

Alias: Ganfeborole; GSK3036656; 2131798-12-2; UNII-KZ8H57WFC7; GSK070 free base; GSK-070 free base; GSK-656 free base; KZ8H57WFC7;
Cat No.:V46819 Purity: ≥98%
Ganfeborole (GSK656 free base) is a potent, selective and orally bioactive inhibitor of M.
Ganfeborole (GSK-3036656; GSK-656)
Ganfeborole (GSK-3036656; GSK-656) Chemical Structure CAS No.: 2131798-12-2
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes

Other Forms of Ganfeborole (GSK-3036656; GSK-656):

  • Ganfeborole (GSK3036656; GSK656) HCl
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Ganfeborole (GSK656 free base) is a potent, selective and orally bioactive inhibitor of M. tuberculosis (TB) leucyl-tRNA synthetase with IC50 of 0.20 μM. Ganfeborole may be used in tuberculosis (TB)-related research.
Biological Activity I Assay Protocols (From Reference)
Targets
Mycobacterium tuberculosis (Mtb) leucyl-tRNA synthetase (LeuRS):GSK656 inhibits Mtb LeuRS with an IC50 of 0.20 μM. It shows high selectivity over human mitochondrial and cytoplasmic LeuRS, with IC50 values of >300 μM and 132 μM, respectively. [1]
ln Vitro
- Antitubercular activity:GSK656 exhibits potent in vitro activity against M. tuberculosis H37Rv with a minimum inhibitory concentration (MIC) of 0.08 μM. [1]
- Enzyme selectivity:The compound demonstrates >1,500-fold selectivity for Mtb LeuRS compared to human cytoplasmic LeuRS, as measured by enzyme inhibition assays. [1]
ln Vivo
- Efficacy in mouse TB model:GSK656 (0.4–10 mg/kg, oral) reduces bacterial burden in the lungs and spleens of M. tuberculosis-infected mice by 2–3 log10 CFU after 14 days of treatment. The ED99 (dose reducing bacterial load by 99%) is 0.4 mg/kg. [1]
- Pharmacokinetics:The compound shows favorable PK properties in mice, including oral bioavailability of 74% and a plasma half-life of 4–6 hours. [1]
Enzyme Assay
Mtb LeuRS inhibition assay: 1. Recombinant Mtb LeuRS is incubated with GSK656 (0.01–10 μM) and radiolabeled leucine ([³H]Leu) in reaction buffer. 2. The formation of Leu-tRNA is measured by nitrocellulose filter binding. 3. IC50 values are calculated from dose-response curves. [1]
Cell Assay
MIC determination in M. tuberculosis: 1. M. tuberculosis H37Rv cultures are exposed to GSK656 (0.01–10 μM) in Middlebrook 7H9 broth. 2. After 7 days of incubation, bacterial growth is assessed by measuring optical density at 600 nm. 3. The MIC is defined as the lowest concentration preventing visible growth. [1]
Animal Protocol
Mouse TB infection model: 1. C57BL/6 mice are infected intranasally with M. tuberculosis H37Rv (1×10⁴ CFU). 2. Starting on day 3 post-infection, GSK656 is administered orally (0.4–10 mg/kg) once daily for 14 days. 3. Bacterial load in tissues is determined by plating homogenates on 7H11 agar. [1]
ADME/Pharmacokinetics
- Absorption: GSK656 is rapidly absorbed in mice, reaching peak plasma concentrations (Cmax) of 1.2–3.5 μM within 1 hour after oral administration. [1]
- Half-life: The plasma half-life in mice is 4–6 hours, supporting once-daily administration. [1]
- Bioavailability: The oral bioavailability in mice is 74%, with high plasma protein binding (>99%). [1]
- Metabolism: This compound is primarily metabolized through oxidation and glucuronidation, with less than 5% excreted unchanged in urine and feces. [1]
Toxicity/Toxicokinetics
Acute toxicity: No lethal or systemic toxicity was observed in mice after a single oral administration of up to 1000 mg/kg of GSK656. [1]
- Hepatic and renal safety: No significant changes in liver enzymes (ALT, AST) or renal function indicators (BUN, creatinine) were observed in mice treated with therapeutic doses of GSK656. [1]
References
Additional Infomation
Mechanism of action: GSK656 selectively inhibits Mycobacterium tuberculosis leucine synthase (LeuRS), blocking the incorporation of leucine into proteins, thereby disrupting bacterial protein synthesis. [1]
- Clinical development: Due to its high efficacy and good safety profile, this compound has entered the clinical trial stage for the treatment of tuberculosis. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H13BCLNO4
Molecular Weight
257.478522062302
Exact Mass
257.062
Elemental Analysis
C, 46.65; H, 5.09; B, 4.20; Cl, 13.77; N, 5.44; O, 24.86
CAS #
2131798-12-2
Related CAS #
Ganfeborole hydrochloride;2131798-13-3
PubChem CID
133080621
Appearance
Typically exists as solid at room temperature
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
17
Complexity
261
Defined Atom Stereocenter Count
1
SMILES
B1(C2=C(C=CC(=C2[C@H](O1)CN)Cl)OCCO)O
InChi Key
DJUOWOXTPXUHDQ-MRVPVSSYSA-N
InChi Code
InChI=1S/C10H13BClNO4/c12-6-1-2-7(16-4-3-14)10-9(6)8(5-13)17-11(10)15/h1-2,8,14-15H,3-5,13H2/t8-/m1/s1
Chemical Name
2-[[(3S)-3-(aminomethyl)-4-chloro-1-hydroxy-3H-2,1-benzoxaborol-7-yl]oxy]ethanol
Synonyms
Ganfeborole; GSK3036656; 2131798-12-2; UNII-KZ8H57WFC7; GSK070 free base; GSK-070 free base; GSK-656 free base; KZ8H57WFC7;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.8838 mL 19.4190 mL 38.8380 mL
5 mM 0.7768 mL 3.8838 mL 7.7676 mL
10 mM 0.3884 mL 1.9419 mL 3.8838 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
A Study to Investigate the Pharmacokinetics of a Combined Oral Contraceptive When Given Alone and in Combination With GSK3036656 in Female Participants of Non-childbearing Potential Aged 18 to 65 Years of Age
CTID: NCT06354257
Phase: Phase 1
Status: Completed
Date: 2024-12-27
Platform Assessing Regimens and Durations In a Global Multisite Consortium for TB
CTID: NCT06114628
Phase: Phase 2
Status: Recruiting
Date: 2024-10-16
Early Bactericidal Activity, Safety & Tolerability of Oral GSK3036656 in a Dual Combination With Novel and Established Antitubercular Agents, or Standard of Care in Adults With Rifampicin Susceptible Pulmonary Tuberculosis
CTID: NCT05382312
Phase: Phase 2
Status: Recruiting
Date: 2024-02-22
An Early Bactericidal Activity, Safety and Tolerability of GSK3036656 in Subjects With Drug-sensitive Pulmonary Tuberculosis
CTID: NCT03557281
Phase: Phase 2
Status: Completed
Date: 2023-10-26
First Time in Human (FTIH) Safety and Pharmacokinetics (PK) Study of GSK3036656 in Healthy Subjects
CTID: NCT03075410
Phase: Phase 1
Status: Completed
Date: 2019-04-19
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