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Green DND-26

Cat No.:V41956 Purity: ≥98%
Green DND-26 is fluorescent dyeused to mark acidic lysosomes to determine the cellular distribution.
Green DND-26
Green DND-26 Chemical Structure CAS No.: 220524-71-0
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
Other Sizes
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Product Description
Green DND-26 is fluorescent dye used to mark acidic lysosomes to determine the cellular distribution. It can stain acidic compartments in live cells and has been shown to selectively accumulate in lamellar bodies in alveolar type II (AT2) cells in the lung.
Green DND-26 (also known as LysoTracker Green DND-26) is a green fluorescently labeled lysosomal probe with a maximum excitation/emission wavelength of 504/511 nm. It is composed of a fluorescein group linked to weak bases that can freely cross the cell membrane and accumulate in lysosomal structures. The dye is selectively retained in acidic lysosomes due to protonation of the weak base moiety, making it suitable for observing lysosomal biosynthesis and related pathogenesis. Its molecular formula is C13H25BF2N4O with a molecular weight of 362.23.
Biological Activity I Assay Protocols (From Reference)
Targets
Green DND-26 targets lysosomes, the acidic organelles responsible for cellular degradation and recycling. The probe does not have a traditional pharmacological target but rather functions as a fluorescent marker for lysosomes. The weak base moiety of the dye is protonated in the acidic environment of lysosomes (pH ~4.5-5.0), causing the dye to become trapped within the organelle. The fluorescein group provides green fluorescence that allows for visualization and quantification of lysosomal content and dynamics in living cells.
ln Vitro
1. Working solution configuration: 1.1 Centrifuge the solution right away to concentrate at the tube's bottom and return it to a constant temperature. 1.2 To get the working concentration of the 1 mM storage solution, dilute it with culture medium or an appropriate buffer (like PBS). Note on recommended working solution concentration: Please make sure that the Green DND-26 working solution is ready for usage by adjusting its concentration to match the current circumstances. 2. 2.1 Suspension cells for cell staining: Centrifuge cells, add PBS, and wash twice for five minutes each time. Adherent cells: remove cells and add digested islets of cell material. Add PBS and centrifuge, then discard the supernatant. Wash twice, for five minutes each time. 2.2 After adding 1 milliliter of the Green DND-26 working solution, incubate for half an hour. 2.3 Discard the supernatant after centrifuging at 400 g for three to four minutes at 4°C. 2.4 Wash the cells twice with PBS, giving them five minutes each time. 2.5 Re-suspend the cells in 1 milliliter of PBS or serum-free water, and examine them using a flow cytometer or fluorescence microscope. Storage temperature: -20°C, shielded from light
In vitro, Green DND-26 is used for live-cell imaging and flow cytometry to label and visualize lysosomes. It is suitable for observing lysosomal internal biosynthesis and related pathogenesis. The dye can be used to study lysosomal trafficking, acidification, and function in various cell types. It is commonly used in combination with other fluorescent probes for multicolor imaging experiments. The recommended working concentration is 50-100 nM.
ln Vivo
In vivo, Green DND-26 is primarily used for ex vivo applications rather than direct in vivo administration. It can be used to label lysosomes in cells isolated from tissues or in tissue sections for histological analysis. The dye has been used to study lysosomal dynamics in zebrafish and other model organisms. However, its use in live mammals is limited due to potential toxicity and rapid clearance. Its primary applications are in vitro for cell biology research.
Enzyme Assay
For in vitro fluorescence characterization, Green DND-26 is dissolved in appropriate buffer, and its absorption and emission spectra are measured using UV-visible and fluorescence spectrophotometers. The maximum excitation is at 504 nm and emission at 511 nm. The pH-dependent fluorescence properties can be characterized by measuring fluorescence intensity in buffers of varying pH to confirm the lysosomal targeting mechanism.
Cell Assay
For live cell staining, cells are cultured on coverslips or in imaging dishes. The Green DND-26 stock solution (1 mM) is diluted to a working concentration of 50-100 nM in pre-warmed culture medium or appropriate buffer. Cells are incubated with the working solution for 30 minutes at room temperature. Cells are then washed twice with PBS for 5 minutes each. Labeled cells are imaged using fluorescence microscopy with FITC filter sets (excitation ~504 nm, emission ~511 nm) or analyzed by flow cytometry.
Animal Protocol
For in vivo applications, Green DND-26 is not typically administered systemically to mammals. In zebrafish or other small model organisms, the dye can be added to the water or injected into embryos for live imaging of lysosomal dynamics. Cells isolated from tissues can be stained ex vivo with Green DND-26 following the cell staining protocol described above, then analyzed by flow cytometry or microscopy. Tissue sections can also be stained with the dye for histological analysis of lysosomal distribution.
ADME/Pharmacokinetics
Green DND-26 is soluble in DMSO (125 mg/mL, 345.08 mM). The compound should be protected from light during handling and storage to prevent photobleaching. Storage is recommended at 4°C for long-term stability, and at -80°C for 6 months or -20°C for 1 month in solvent. The dye is for research use only and is not intended for human or veterinary use.
Toxicity/Toxicokinetics
Toxicological data for Green DND-26 have not been extensively reported, as it is a fluorescent probe rather than a therapeutic agent. At the low concentrations used for cell staining (50-100 nM), the dye is generally well-tolerated by cells for short-term experiments. Higher concentrations or prolonged exposure may be cytotoxic. The compound is for research use only and is not intended for human use. Standard laboratory safety precautions should be followed when handling this compound.
References

[1]. Acid-Activatable Transmorphic Peptide-Based Nanomaterials for Photodynamic Therapy. Angew Chem Int Ed Engl. 2020;59(46):20582-20588.

[2]. LysoTracker is a marker of differentiated alveolar type II cells. Respir Res. 2013;14(1):123. Published 2013 Nov 11.

Additional Infomation
DND-26 dye is a BODIPY dye that is used as a fluorescent dye.
Green DND-26 (LysoTracker Green DND-26) is a green fluorescent lysosomal probe with excitation/emission at 504/511 nm. It consists of a fluorescein group linked to weak bases that accumulate in lysosomes. The dye is used for live-cell imaging of lysosomal dynamics, biosynthesis, and pathogenesis. It is suitable for fluorescence microscopy and flow cytometry applications. Green DND-26 is a research tool for cell biology and is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H25BN4OF2
Molecular Weight
362.23
Exact Mass
362.208
CAS #
220524-71-0
PubChem CID
15410444
Appearance
Orange to red solid powder
Melting Point
120 °C
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
6
Heavy Atom Count
26
Complexity
674
Defined Atom Stereocenter Count
0
InChi Key
SXZBATLAPYSXND-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H25BF2N4O/c1-13-11-14(2)24-17(13)12-16-6-5-15(25(16)19(24,20)21)7-8-18(26)22-9-10-23(3)4/h5-6,11-12H,7-10H2,1-4H3,(H,22,26)
Chemical Name
3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-(dimethylamino)ethyl]propanamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7607 mL 13.8034 mL 27.6068 mL
5 mM 0.5521 mL 2.7607 mL 5.5214 mL
10 mM 0.2761 mL 1.3803 mL 2.7607 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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