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Gabaculine HCl

Cat No.:V21463 Purity: ≥98%
DL-Gabaculine HCl is a neurotoxin that irreversibly inhibits bacterial pyridoxal phosphate-linked γ-aminobutyric acid-α-ketoglutaric acid transaminase, with Ki of 2.86 μM.
Gabaculine HCl
Gabaculine HCl Chemical Structure CAS No.: 59556-17-1
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
100mg
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Product Description
DL-Gabaculine HCl is a neurotoxin that irreversibly inhibits bacterial pyridoxal phosphate-linked γ-aminobutyric acid-α-ketoglutaric acid transaminase, with Ki of 2.86 μM.
Gabaculine HCl (CAS#: 59556-17-1, molecular weight 168.62, molecular formula C6H9ClN2O2) is a neuroactive compound that acts as a potent inhibitor of GABA transaminase (GABA-T). It is a naturally occurring amino acid analog found in the bacterium Streptomyces toyocaensis. Gabaculine HCl is used in research to study GABAergic neurotransmission. By inhibiting GABA-T, the enzyme responsible for the breakdown of GABA, gabaculine increases GABA levels in the brain. It is a research tool for studying the role of GABA in neurological disorders.
Biological Activity I Assay Protocols (From Reference)
Targets
Gabaculine HCl targets GABA transaminase (GABA-T), the enzyme responsible for the catabolism of the inhibitory neurotransmitter GABA. By inhibiting GABA-T, gabaculine prevents the breakdown of GABA, leading to increased GABA levels in the synaptic cleft. This enhances GABAergic neurotransmission, resulting in increased inhibitory signaling in the brain. The compound's mechanism is similar to that of other GABA-T inhibitors, such as vigabatrin. It is a potent and irreversible inhibitor of GABA-T.
ln Vitro
In vitro, gabaculine HCl is a potent inhibitor of GABA transaminase activity. Its inhibitory activity has been characterized in enzymatic assays using purified GABA-T preparations. The compound irreversibly binds to the enzyme, leading to sustained inhibition. Its effects on GABA levels have been demonstrated in various in vitro systems. Its potency and selectivity for GABA-T have been established.
ln Vivo
In vivo, gabaculine HCl increases GABA levels in the brain by inhibiting GABA-T. This leads to enhanced GABAergic neurotransmission and increased inhibitory signaling. The compound has been used in animal models to study the role of GABA in various neurological and psychiatric disorders. Its effects on behavior, seizure activity, and neurotransmitter levels have been studied. Specific dosing regimens are available in the scientific literature.
Enzyme Assay
In vitro enzyme assays for gabaculine HCl involve measuring the inhibition of GABA transaminase activity using purified enzyme preparations. The compound is incubated with GABA-T and its substrate GABA, and the production of succinic semialdehyde is measured using spectrophotometric or chromatographic methods. The IC50 value is determined from dose-response curves. The compound's irreversible binding can be confirmed by dialysis experiments.
Cell Assay
In vitro cell-based assays for gabaculine HCl involve treating neuronal cells with the compound to assess its effects on GABA levels and GABAergic signaling. GABA levels in cell lysates or culture media are measured using HPLC or ELISA. The compound's effects on neuronal activity can be assessed using electrophysiological recordings. These assays characterize the compound's cellular activity.
Animal Protocol
In vivo animal experiments for gabaculine HCl have been conducted in models of epilepsy, anxiety, and other neurological disorders. The compound is typically administered via injection. Its effects on seizure activity, anxiety-like behavior, and GABA levels in the brain are assessed. Efficacy endpoints depend on the specific model being studied. These studies have helped elucidate the role of GABA in various neurological conditions.
ADME/Pharmacokinetics
Gabaculine HCl has a molecular weight of 168.62 and a molecular formula of C6H9ClN2O2. It is a hydrochloride salt of gabaculine. The compound is a naturally occurring amino acid analog. It is typically dissolved in water or saline for in vivo administration. Its pharmacokinetic properties, including brain penetration, have been characterized in preclinical studies. It is typically stored under recommended conditions for research compounds.
Toxicity/Toxicokinetics
Specific toxicity data for gabaculine HCl is not extensively reported. As a GABA-T inhibitor, its safety profile is related to its effects on GABAergic neurotransmission. The compound may cause sedation, ataxia, and other CNS effects at high doses. Comprehensive toxicological studies would be required for therapeutic development. Standard safety precautions should be taken when handling the compound.
References

[1]. Rando R R. Mechanism of the irreversible inhibition of γ-aminobutyric acid-α-ketoglutaric acid transaminase by the neurotoxin gabaculine. Biochemistry, 1977, 16(21): 4604-4610.

Additional Infomation
Gabaculine HCl is a potent inhibitor of GABA transaminase (GABA-T) used in research to study GABAergic neurotransmission. It is a naturally occurring amino acid analog. By inhibiting GABA-T, gabaculine increases GABA levels in the brain. The compound has been used in animal models to study epilepsy, anxiety, and other neurological disorders. Gabaculine HCl is a research tool for studying the role of GABA in the brain.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C7H9NO2.HCL
Molecular Weight
175.6128
Exact Mass
175.04
CAS #
59556-17-1
Related CAS #
59556-29-5;59556-17-1 (HCl);
PubChem CID
198382
Appearance
White to off-white solid powder
Boiling Point
304.6ºC at 760 mmHg
Melting Point
203ºC (dec.)(lit.)
Flash Point
138ºC
LogP
1.786
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
1
Heavy Atom Count
11
Complexity
206
Defined Atom Stereocenter Count
0
InChi Key
OBZFLUDUSNCZKL-UHFFFAOYSA-N
InChi Code
InChI=1S/C7H9NO2.ClH/c8-6-3-1-2-5(4-6)7(9)10;/h1-3,6H,4,8H2,(H,9,10);1H
Chemical Name
5-aminocyclohexa-1,3-diene-1-carboxylic acid;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.6944 mL 28.4722 mL 56.9444 mL
5 mM 1.1389 mL 5.6944 mL 11.3889 mL
10 mM 0.5694 mL 2.8472 mL 5.6944 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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