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Formycin A

Alias: Formycin A Formycin A
Cat No.:V40028 Purity: ≥98%
Formycin A(NSC-102811) is a purine nucleoside antibiotic, acting as a potent human immunodeficiency virus type 1 (HIV-1) inhibitor with an EC50 of 10 μM.
Formycin A
Formycin A Chemical Structure CAS No.: 6742-12-7
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
Other Sizes
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Product Description
Formycin A (NSC-102811) is a purine nucleoside antibiotic, acting as a potent human immunodeficiency virus type 1 (HIV-1) inhibitor with an EC50 of 10 μM. It has antitumor and antiviral activities.


Formycin A (CAS#: 6742-12-7) is a C-nucleoside antibiotic and purine nucleoside analog produced by the bacterium Nocardia interforma. It is a potent inhibitor of the bacterial enzyme purine nucleoside phosphorylase (PNP), with selectivity for bacterial PNP over mammalian PNP. Formycin A is also an antineoplastic agent and has been shown to enhance glucose-stimulated insulin release. It is a research tool in nucleoside metabolism, oncology, and diabetes research.
Biological Activity I Assay Protocols (From Reference)
Targets
Purine Nucleoside Phosphorylase (PNP), particularly bacterial PNP. Formycin A is a potent and selective inhibitor of the E. coli enzyme purine nucleoside phosphorylase (PNP), which catalyzes the phosphorolysis of purine nucleosides (e.g., inosine, guanosine) to the corresponding purine base and ribose-1-phosphate. It has much lower activity against mammalian PNP, making it a selective bacterial enzyme inhibitor. As a C-nucleoside (C-C bond linking the base and ribose), Formycin A is resistant to enzymatic hydrolysis and deamination.
ln Vitro
Zidovudine (AZT; dideoxynucleoside chain terminator) is antagonistic to formycin A (NSC 102811; 1 μM, 5 μM, 10 μM).
Formycin A inhibits E. coli purine nucleoside phosphorylase (PNP) with high potency. It is a selective inhibitor of bacterial PNP with limited activity against the mammalian enzyme. Formycin A has been shown to upsurge insulin release elevated by glucose in vitro. As an antineoplastic agent, Formycin A inhibits viral polymerases and can terminate viral RNA synthesis via analog incorporation, making it useful for studying viral replication mechanisms. It is a purine analog that may be incorporated into DNA/RNA.
ln Vivo
In animal models, Formycin A has shown antineoplastic activity. It has also been investigated for its effects on insulin secretion. In studies using glucose-stimulated insulin release assays, Formycin A enhances insulin secretion. Its antibacterial activity is limited, as it is primarily a tool for studying nucleoside metabolism and PNP inhibition. In vivo efficacy as an anticancer or antiviral agent is documented but limited.
Enzyme Assay
Cell-free purine nucleoside phosphorylase (PNP) inhibition assays: Purified PNP from E. coli (0.1-0.5 U/mL) is incubated with varying concentrations of Formycin A (0.1-100 microM) in 100 mM potassium phosphate buffer (pH 7.4) containing 0.5 mM inosine as substrate for 10-30 minutes at 37degC. The reaction is terminated by adding 0.5 M perchloric acid, and the product (hypoxanthine) is quantified by HPLC (C18 column, 254 nm detection) or by measuring the decrease in absorbance at 293 nm (deltaε = 8,100 M-¹cm-¹). The IC50 is calculated from the inhibition of inosine phosphorolysis.
Cell Assay
K562 human leukemia cells or other cancer cell lines are cultured in RPMI-1640 with 10% FBS. Cells (5 × 103 to 1 × 10⁴ cells/well) are seeded in 96-well plates and treated with Formycin A (0.1-100 microM) for 48-72 hours. Cell viability is measured by MTT or CellTiter-Glo assay. The IC50 for growth inhibition is calculated. For insulin release studies, MIN6 mouse pancreatic beta-cells or isolated rat pancreatic islets are cultured and treated with Formycin A (1-100 microM) in the presence of 2.8 mM (basal) or 16.7 mM (stimulatory) glucose for 1-2 hours. Insulin released into the supernatant is measured by ELISA.
Animal Protocol
Not applicable (primarily used in vitro, limited published in vivo protocols). For antineoplastic studies, immunodeficient mice bearing xenografts of K562 or other leukemia cells would be treated with Formycin A (10-50 mg/kg i.p. or i.v.) once daily for 14-21 days, and tumor volumes would be measured. However, published in vivo data for Formycin A are limited. The compound is primarily used as a biochemical tool for in vitro assays, not as a lead compound for in vivo efficacy studies.
ADME/Pharmacokinetics
Formycin A is a C-nucleoside analog with a molecular weight of 282.25 g/mol. As a nucleoside analog, it is transported into cells via nucleoside transporters and is phosphorylated by cellular kinases to its mono-, di-, and triphosphate forms. The triphosphate is the active species that inhibits viral polymerases or is incorporated into nucleic acids. The compound has a short half-life in plasma (minutes) due to rapid clearance. Limited pharmacokinetic data are available.
Toxicity/Toxicokinetics
Formycin A is a research compound and is not approved for human therapeutic use. Toxicity data are limited. As a nucleoside analog, it may have cytotoxic effects on rapidly dividing cells, including bone marrow (myelosuppression) and gastrointestinal epithelium. Standard laboratory safety precautions should be used when handling this compound. Avoid inhalation, skin contact, and ingestion. The compound is for research use only.
References

[1]. Discovery of novel ribonucleoside analogs with activity against human immunodeficiency virus type 1.J Virol. 2014 Jan;88(1):354-63.

[2]. Comparative Investigation into Formycin A and Pyrazofurin A Biosynthesis Reveals Branch Pathways for the Construction of C-Nucleoside Scaffolds. Appl Environ Microbiol. 2020 Jan 7;86(2).

Additional Infomation
Formycin A is a fulvicin compound with antitumor activity. It has been reported that Streptomyces sparsely distributed also contains fulvicin, and relevant data are available for reference.
Formycin A is a C-nucleoside (C-C glycosidic bond) antibiotic and purine analog. Unlike typical N-nucleosides (which have an N-C bond linking the base and ribose), the C-nucleoside linkage is resistant to hydrolysis and enzymatic cleavage (e.g., by adenosine deaminase). This stability makes Formycin A a valuable probe for studying nucleoside metabolism, purine salvage pathways, and viral replication. It is also a selective inhibitor of bacterial purine nucleoside phosphorylase (PNP), making it useful for distinguishing bacterial and mammalian PNP activities. Formycin A is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C₁₀H₁₃N₅O₄
Molecular Weight
267.24
Exact Mass
285.107
CAS #
6742-12-7
PubChem CID
447199
Appearance
White to off-white solid powder
Density
1.771g/cm3
Boiling Point
709.5ºC at 760 mmHg
Melting Point
153-155ºC
Flash Point
382.9ºC
Index of Refraction
1.803
LogP
-2.2
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
2
Heavy Atom Count
19
Complexity
335
Defined Atom Stereocenter Count
4
SMILES
C1=NC2=C(NN=C2C(=N1)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O
InChi Key
KBHMEHLJSZMEMI-KSYZLYKTSA-N
InChi Code
InChI=1S/C10H13N5O4/c11-10-6-4(12-2-13-10)5(14-15-6)9-8(18)7(17)3(1-16)19-9/h2-3,7-9,16-18H,1H2,(H,14,15)(H2,11,12,13)/t3-,7-,8-,9+/m1/s1
Chemical Name
(2S,3R,4S,5R)-2-(7-amino-2H-pyrazolo[4,3-d]pyrimidin-3-yl)-5-(hydroxymethyl)oxolane-3,4-diol
Synonyms
Formycin A Formycin A
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.7420 mL 18.7098 mL 37.4195 mL
5 mM 0.7484 mL 3.7420 mL 7.4839 mL
10 mM 0.3742 mL 1.8710 mL 3.7420 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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