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Fmoc-N-amido-PEG2-acid

Cat No.:V21186 Purity: ≥98%
Fmoc-NH-PEG2-CH2CH2COOH is a degradable ADC linker used for the synthesis of antibody active molecular conjugates (ADC).
Fmoc-N-amido-PEG2-acid
Fmoc-N-amido-PEG2-acid Chemical Structure CAS No.: 872679-70-4
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Fmoc-NH-PEG2-CH2CH2COOH is a degradable ADC linker used for the synthesis of antibody active molecular conjugates (ADC). Fmoc-NH-PEG2-CH2CH2COOH is also a PEG-based PROTAC (PROteolysis TArgeting Chimera) linker that can be used for PROTAC synthesis.
Fmoc-N-amido-PEG2-acid is a monodisperse polyethylene glycol (PEG)-based bifunctional linker featuring an Fmoc-protected amine and a terminal propionic acid group. It has a molecular weight of 399.44 and a molecular formula of C₂₂H₂₅NO₆.
Biological Activity I Assay Protocols (From Reference)
Targets
Fmoc-N-amido-PEG2-acid does not have a biological target; it is a chemical linker for bioconjugation. The Fmoc group protects the amine during synthesis and can be removed under basic conditions. The terminal carboxylic acid enables coupling to amine-containing molecules, while the PEG spacer improves solubility and reduces aggregation.
ln Vitro
An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC. Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC targets and selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system.
In vitro activity is not applicable as this is a chemical linker, not a bioactive compound. Its utility lies in its chemical reactivity rather than biological activity. The compound is used in solid-phase peptide synthesis (SPPS) and the synthesis of antibody-drug conjugates (ADCs) and PROTACs.
ln Vivo
In vivo activity is not applicable as this is a chemical linker used for in vitro synthesis and conjugation. The compound is not a therapeutic agent and is not administered to animals for pharmacological effects. Its applications are in the chemical synthesis of bioconjugates and drug delivery systems.
Enzyme Assay
For non-cellular assays, Fmoc-N-amido-PEG2-acid is used in chemical conjugation reactions. The carboxylic acid group can be activated with coupling reagents (e.g., HATU, EDC) to form amide bonds with amine-containing molecules. The Fmoc group can be deprotected with piperidine to reveal a free amine for further conjugation. Reaction progress is monitored by TLC, HPLC, or mass spectrometry.
Cell Assay
In vitro cellular assays are not applicable as this compound is a chemical linker used in synthesis, not a bioactive molecule. It may be used to synthesize conjugates that are later tested in cellular assays, but the linker itself does not have direct cellular activity. Its role is to provide a hydrophilic PEG spacer and orthogonal functional groups for bioconjugation.
Animal Protocol
In vivo animal experiments are not applicable as this compound is a chemical linker, not a therapeutic agent. It is used in the synthesis of conjugates that may be tested in animal models, but the linker itself is not administered to animals. Its properties contribute to the pharmacokinetic and biodistribution profile of the final conjugate.
ADME/Pharmacokinetics
Fmoc-N-amido-PEG2-acid has a molecular weight of 399.44 and a molecular formula of C₂₂H₂₅NO₆. It is a solid at room temperature and is typically stored at -20°C. The compound is soluble in organic solvents such as DMSO and DMF. The PEG2 spacer provides moderate hydrophilicity and flexibility to conjugated molecules.
Toxicity/Toxicokinetics
Fmoc-N-amido-PEG2-acid is a chemical reagent and is not intended for therapeutic use. Standard laboratory safety precautions should be followed when handling the compound. It may cause skin irritation (H315), serious eye irritation (H319), and respiratory irritation (H335). Appropriate personal protective equipment should be used.
References

[1]. Chemical synthesis of Shiga toxin subunit B using a next-generation traceless "helping hand" solubilizing tag. Org Biomol Chem. 2019 Dec 28;17(48):10237-10244.

Additional Infomation
Fmoc-N-amido-PEG2-acid is a PEG linker used in peptide synthesis, ADC development, and PROTAC synthesis. The Fmoc group provides orthogonal protection for the amine, enabling stepwise synthesis. The short PEG2 spacer improves solubility and reduces aggregation in bioconjugates. The compound is available from various commercial suppliers for research applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H25NO6
Molecular Weight
399.4370
Exact Mass
399.168
CAS #
872679-70-4
PubChem CID
51340973
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
622.1±55.0 °C at 760 mmHg
Flash Point
330.0±31.5 °C
Vapour Pressure
0.0±1.9 mmHg at 25°C
Index of Refraction
1.584
LogP
2.96
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
12
Heavy Atom Count
29
Complexity
505
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C2C(=C1)C(C3=CC=CC=C32)COC(=O)NCCOCCOCCC(=O)O
InChi Key
QWHLFJJLRVOHTM-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H25NO6/c24-21(25)9-11-27-13-14-28-12-10-23-22(26)29-15-20-18-7-3-1-5-16(18)17-6-2-4-8-19(17)20/h1-8,20H,9-15H2,(H,23,26)(H,24,25)
Chemical Name
3-[2-[2-(9H-fluoren-9-ylmethoxycarbonylamino)ethoxy]ethoxy]propanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5035 mL 12.5175 mL 25.0350 mL
5 mM 0.5007 mL 2.5035 mL 5.0070 mL
10 mM 0.2504 mL 1.2518 mL 2.5035 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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