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E-3620

Cat No.:V44782 Purity: ≥98%
E-3620 is a potent 5-HT3 receptor blocker (antagonist).
E-3620
E-3620 Chemical Structure CAS No.: 151213-86-4
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
E-3620 is a potent 5-HT3 receptor blocker (antagonist). E-3620 may be utilized in the research/study of movement disorders and gastrointestinal motility disorders.
E-3620 (CAS 151213-86-4; [3(S)-endo]-4-amino-5-chloro-N-(8-methyl-8-azabicyclo[3.2.1]oct-3-yl)-2-[(1-methyl-2-butynyl)oxy]benzamide) is a potent and selective 5-HT3 receptor antagonist developed as a research tool and candidate for serotonin-mediated conditions. It is a benzamide derivative bearing a tropane (8-methyl-8-azabicyclo[3.2.1]octane) ring, a 4-amino-5-chloro-substituted benzamide core, and a 1-methyl-2-butynyl ether side chain. Its molecular formula is C20H27Cl2N3O2 (as the hydrochloride salt), with a molecular weight of 412.35. The compound is orally active in animal models and is used to probe 5-HT3-dependent emesis, gastrointestinal motility, and movement disorders, where serotonin acting at the 5-HT3 ligand-gated ion channel is a key driver of vagal afferent activation and emetic reflex initiation.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary molecular target is the 5-HT3 receptor, a pentameric ligand-gated cation channel belonging to the Cys-loop superfamily. E-3620 behaves as a competitive antagonist at this receptor, blocking serotonin-evoked channel opening and thereby suppressing 5-HT3-mediated depolarization of vagal afferents, enteric neurons, and area postrema neurons. Its selectivity for 5-HT3 over other 5-HT receptor subtypes is a defining feature of the benzamide/tropane class, and this selectivity underlies its use as a pharmacological tool to dissect 5-HT3-dependent physiology without confounding activity at 5-HT1, 5-HT2, or 5-HT4 receptors.
ln Vitro
Functional in vitro potency is typically characterized in 5-HT3 receptor-expressing cell systems and in isolated tissue preparations rather than by a single published IC50 value. In radioligand binding assays using a 5-HT3-selective radioligand (e.g., [³H]granisetron or [³H]BRL-43694), E-3620 displaces specific binding in a concentration-dependent manner, yielding Ki values in the low nanomolar range typical of potent 5-HT3 antagonists. In functional assays, the compound right-shifts the serotonin concentration–response curve for 5-HT3-mediated cation influx (measured by fluorescent membrane-potential or Ca²⁺ dyes) or for 5-HT3-mediated contraction of isolated guinea-pig ileum, consistent with competitive antagonism.
ln Vivo
In vivo, E-3620 is effective in suppressing cisplatin-induced emesis in canine models, a classical 5-HT3-dependent readout. In beagle dogs, cisplatin triggers acute vomiting through 5-HT release from enterochromaffin cells and subsequent 5-HT3 activation on vagal afferents; E-3620 dose-dependently reduces or abolishes this emetic response, establishing in vivo target engagement. The compound is also used in animal models of dyskinesia and gastrointestinal motility disorders, where 5-HT3 blockade modulates enteric reflex activity and visceral sensory signaling.
Enzyme Assay
Non-cellular receptor-binding assays for E-3620 use membranes prepared from cells expressing recombinant 5-HT3A or native 5-HT3 receptors (e.g., N1E-115 neuroblastoma membranes or rat brainstem membranes). The membranes are incubated with a fixed concentration of a 5-HT3-selective radioligand and increasing concentrations of E-3620 in a physiological buffer; nonspecific binding is defined with an excess of a known 5-HT3 antagonist. After equilibrium, bound and free radioligand are separated by rapid filtration, and the retained radioactivity is counted to construct a displacement curve and calculate Ki.
Cell Assay
Cell-based functional assays use 5-HT3-expressing cell lines loaded with a fluorescent Ca²⁺ indicator or a membrane-potential dye. Cells are pre-incubated with E-3620 at graded concentrations, then stimulated with serotonin or a selective 5-HT3 agonist; the agonist-evoked Ca²⁺ transient or depolarization is recorded, and the rightward shift of the agonist concentration–response curve is used to calculate antagonist potency (pA2 or IC50). Isolated guinea-pig ileum longitudinal muscle–myenteric plexus preparations provide a complementary tissue-level assay: E-3620 is applied before cumulative serotonin concentrations, and the inhibition of 5-HT3-mediated contraction is quantified.
Animal Protocol
In vivo, beagle dogs receive E-3620 by an appropriate route (oral or intravenous) before cisplatin challenge, and the number and latency of emetic episodes are recorded over a defined observation period. Dose–response relationships are established by comparing emetic frequency in vehicle-treated versus E-3620-treated animals. For gastrointestinal motility studies, rodents or dogs receive the compound and transit is measured by charcoal meal progression or radiolabeled meal distribution; for dyskinesia models, drug-induced abnormal movements are scored after E-3620 pretreatment. Plasma exposure is measured in parallel to relate 5-HT3 occupancy to the functional endpoint.
References

[1]. George Peter Arthur Rice. 5-ht3 receptor antagonists for dyskinesia. CA2231887A1.

[2]. Combination of dipeptidyl peptidase IV (DPP-IV) inhibitors and compounds modulating 5-HT3 and/or 5-HT4 receptors for therapeutic use. WO2006005613A1.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H27CL2N3O2
Molecular Weight
412.353283166885
Exact Mass
411.148
CAS #
151213-86-4
PubChem CID
11281359
Appearance
Off-white to light yellow solid powder
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
4
Heavy Atom Count
27
Complexity
572
Defined Atom Stereocenter Count
3
SMILES
CC#C[C@H](C)OC1=CC(=C(C=C1C(=O)NC2C[C@H]3CC[C@@H](C2)N3C)Cl)N.Cl
InChi Key
GMHMNKHDLXRRGF-LZMJSSQSSA-N
InChi Code
InChI=1S/C20H26ClN3O2.ClH/c1-4-5-12(2)26-19-11-18(22)17(21)10-16(19)20(25)23-13-8-14-6-7-15(9-13)24(14)3;/h10-15H,6-9,22H2,1-3H3,(H,23,25);1H/t12-,13?,14-,15+;/m0./s1
Chemical Name
4-amino-5-chloro-N-[(1S,5R)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl]-2-[(2S)-pent-3-yn-2-yl]oxybenzamide;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~242.51 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution → 50 μL Tween 80 → 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300 :Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO → 400 μLPEG300 → 50 μL Tween 80 → 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO → 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO → 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin → 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO → 100 μLPEG300 → 200 μL castor oil → 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol → 100 μL Cremophor → 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH → 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300:Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH → 400 μLPEG300 → 50 μL Tween 80 → 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4251 mL 12.1256 mL 24.2512 mL
5 mM 0.4850 mL 2.4251 mL 4.8502 mL
10 mM 0.2425 mL 1.2126 mL 2.4251 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration: mg/mL;

Method for preparing DMSO stock solution: mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation::Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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