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DAUDA

Cat No.:V49715 Purity: ≥98%
DAUDA (11-(dansylamino) undecanoic acid) is an environmentally sensitive fluorescent fatty acid analog.
DAUDA
DAUDA Chemical Structure CAS No.: 73025-02-2
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
DAUDA (11-(dansylamino) undecanoic acid) is an environmentally sensitive fluorescent fatty acid analog. DAUDA enters the binding protein by changing its intensity and fluorescence emission spectrum. DAUDA was applied to determine the relative affinity of natural fatty acids for Schistosoma mansoni Sm14 fatty acid binding protein polymorphs.
DAUDA (11-(Dansylamino)undecanoic acid) (CAS#: 73025-02-2) is an environment-sensitive fluorescent fatty acid analogue. It has a molecular formula of C23H34N2O4S and a molecular weight of 434.59. DAUDA alters its fluorescence intensities and emission spectra on entry into binding proteins. It is used to determine the relative affinity of natural fatty acids for fatty acid binding proteins.
Biological Activity I Assay Protocols (From Reference)
Targets
DAUDA does not have a specific biological target but functions as a fluorescent probe for fatty acid binding proteins. As an environment-sensitive fluorescent fatty acid analogue, DAUDA changes its fluorescence properties upon binding to proteins. It is used to study the binding affinity of fatty acids to fatty acid binding proteins (e.g., Sm14 from Schistosoma mansoni). Its fluorescence properties make it a valuable tool for studying lipid-protein interactions and fatty acid binding.
ln Vitro
In vitro, DAUDA is used as a fluorescent probe to study fatty acid binding proteins. Its fluorescence intensity and emission spectrum change upon binding to proteins. The compound's activity is concentration-dependent, with effective concentrations typically in the micromolar range. In binding assays, DAUDA is used to determine the relative affinity of natural fatty acids for fatty acid binding proteins. Its environment-sensitive fluorescence makes it a valuable tool for studying lipid-protein interactions and fatty acid binding.
ln Vivo
In vivo, DAUDA is not used as a therapeutic agent. It is a fluorescent probe used in biochemical and biophysical research. Its in vivo applications are limited to research settings, where it may be used to study fatty acid binding proteins in tissue samples. The compound is not administered to animals for therapeutic purposes. Its in vivo applications are limited to ex vivo studies. The compound is for research use only and is not approved for human therapeutic applications.
Enzyme Assay
The in vitro fatty acid binding assay for DAUDA typically uses purified fatty acid binding proteins (e.g., Sm14 from S. mansoni). The assay is performed in 96-well plates with the protein, varying concentrations of DAUDA (typically 0.1 to 100 µM), and competing natural fatty acids. Fluorescence is measured at excitation/emission wavelengths appropriate for DAUDA. The displacement of DAUDA by natural fatty acids is used to determine the relative affinity of the fatty acids for the binding protein. Binding constants are calculated from competition curves. Positive controls (e.g., known fatty acid binders) and negative controls (buffer only) are included in each assay run.
Cell Assay
For in vitro cellular assays, cells or tissue homogenates containing fatty acid binding proteins are incubated with DAUDA at concentrations ranging from 0.1 to 100 µM. Fluorescence is measured using a fluorescence plate reader or spectrofluorometer. The binding of DAUDA to proteins is assessed by changes in fluorescence intensity or emission spectra. Cell viability is assessed using MTT or CellTiter-Glo assays. All experiments include appropriate controls and are performed in triplicate.
Animal Protocol
For in vivo studies, DAUDA is not typically administered to animals as a therapeutic agent. It may be used in ex vivo studies on tissue samples. Tissues are harvested and homogenized, and DAUDA is added to the homogenates for fatty acid binding assays. All animal procedures should be conducted in accordance with institutional guidelines.
ADME/Pharmacokinetics
The pharmacokinetic properties of DAUDA are not relevant, as it is a fluorescent probe rather than a therapeutic agent. The compound has a molecular weight of 434.59. It is a lipophilic molecule. It is used in vitro and ex vivo for fluorescence-based assays. The compound should be stored protected from light to prevent photobleaching. Detailed PK data are not available in publicly accessible literature.
Toxicity/Toxicokinetics
The toxicology of DAUDA is primarily related to its use as a fluorescent probe. At the low concentrations used for fluorescence assays (typically 0.1 to 100 µM), it is generally considered non-toxic to cells. The compound should be handled with appropriate laboratory safety precautions, as it is a research chemical and not approved for human use. Comprehensive toxicology studies would be required if the compound were to be used for therapeutic applications.
References

[1]. Gene structure and M20T polymorphism of the Schistosoma mansoni Sm14 fatty acid-binding protein. Molecular, functioanl, and immunoprotection analysis. J Biol Chem. 2003; 278(15):12745-51.

Additional Infomation
DAUDA is a sulfonic acid derivative, belonging to the naphthalene class of compounds.
DAUDA (11-(Dansylamino)undecanoic acid) is an environment-sensitive fluorescent fatty acid analogue. It alters its fluorescence on entry into binding proteins. It is used to determine the relative affinity of natural fatty acids for fatty acid binding proteins. It is not approved for human use and is intended for research purposes only. It is available as a high-purity research reagent for laboratory use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H34N2O4S
Molecular Weight
434.59206
Exact Mass
434.223
CAS #
73025-02-2
PubChem CID
122016
Appearance
White to off-white solid powder
Density
1.2±0.1 g/cm3
Boiling Point
607.9±53.0 °C at 760 mmHg
Flash Point
321.5±30.9 °C
Vapour Pressure
0.0±1.8 mmHg at 25°C
Index of Refraction
1.573
LogP
5.87
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
14
Heavy Atom Count
30
Complexity
603
Defined Atom Stereocenter Count
0
InChi Key
CEPGVMDMVJGHFQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H34N2O4S/c1-25(2)21-15-11-14-20-19(21)13-12-16-22(20)30(28,29)24-18-10-8-6-4-3-5-7-9-17-23(26)27/h11-16,24H,3-10,17-18H2,1-2H3,(H,26,27)
Chemical Name
11-[[5-(dimethylamino)naphthalen-1-yl]sulfonylamino]undecanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~230.10 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3010 mL 11.5051 mL 23.0102 mL
5 mM 0.4602 mL 2.3010 mL 4.6020 mL
10 mM 0.2301 mL 1.1505 mL 2.3010 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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