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Citrazinic acid

Alias: 2,6-Dihydroxyisonicotinate Kyselina citrazinova Citrazinic acid
Cat No.:V18394 Purity: ≥98%
Citrazinic acid is a weakly fluorescent compound whose optical properties depend on the aggregation state and chemical environment.
Citrazinic acid
Citrazinic acid Chemical Structure CAS No.: 99-11-6
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Citrazinic acid is a weakly fluorescent compound whose optical properties depend on the aggregation state and chemical environment. Citrazinic acid strongly tends to form dimers at higher concentrations.
Citrazinic acid is a weakly fluorescent compound whose optical properties depend on aggregation state and chemical environment. It can inhibit 3-dehydroquinate dehydratase from Mycobacterium tuberculosis. The compound is used to synthesize derivatives of pyrimidinones and oxazinones. It has also been utilized in electrochemical sensors for detecting biological small molecules.
Biological Activity I Assay Protocols (From Reference)
Targets
Citrazinic acid targets 3-dehydroquinate dehydratase, an enzyme in the shikimate pathway of Mycobacterium tuberculosis, inhibiting its activity. This pathway is essential for the biosynthesis of aromatic amino acids in bacteria and is absent in mammals, making it a potential target for antibacterial drug development. The compound's fluorescence properties are dependent on its aggregation state and chemical environment.
ln Vitro
Citrazinic acid inhibits 3-dehydroquinate dehydratase from Mycobacterium tuberculosis. It is a weakly fluorescent compound, and its optical properties change with aggregation state and pH. The compound strongly tends to form dimers at high concentrations. Preliminary studies suggest that citrazinic acid may exhibit antimicrobial properties.
ln Vivo
In vivo activity data for citrazinic acid are limited, as it is primarily a research compound and biochemical tool. Its antibacterial activity against Mycobacterium tuberculosis has been demonstrated in vitro, but in vivo efficacy has not been extensively studied. The compound's fluorescence properties may be useful for imaging applications.
Enzyme Assay
In vitro assays for citrazinic acid involve measuring the inhibition of 3-dehydroquinate dehydratase activity. The enzyme is incubated with its substrate, 3-dehydroquinate, in the presence of varying concentrations of citrazinic acid. The formation of the product, 3-dehydroshikimate, is measured spectrophotometrically at 234 nm. IC50 values are calculated from inhibition curves.
Cell Assay
Cellular assays for citrazinic acid are performed using Mycobacterium tuberculosis cultures. Bacteria are cultured in appropriate media and treated with citrazinic acid at varying concentrations. Bacterial growth is assessed by measuring optical density or colony-forming units (CFU). The compound's minimum inhibitory concentration (MIC) is determined. Cytotoxicity may be assessed in mammalian cell lines.
Animal Protocol
In vivo animal studies with citrazinic acid are limited, as it is primarily a research compound. If used, it would likely be administered in a mouse model of tuberculosis infection. Efficacy would be assessed by measuring bacterial burden in the lungs and spleen. Dosing regimens would be determined based on preliminary pharmacokinetic data.
ADME/Pharmacokinetics
Pharmacokinetic data for citrazinic acid are limited【L7】. Its molecular weight is 155.11 g/mol. The compound is a polar, water-soluble molecule, which may limit its ability to cross biological membranes. For research use, it is typically dissolved in DMSO or water.
Toxicity/Toxicokinetics
Comprehensive toxicological data for citrazinic acid are limited【L7】. As a weakly fluorescent compound, it is not expected to be highly toxic. However, no systematic toxicity studies have been reported. The compound should be handled with standard laboratory safety precautions【L7】.
References

[1]. Anomalous Optical Properties of Citrazinic Acid under Extreme pH Conditions. ACS Omega. 2020 May 5;5(19):10958-10964.

Additional Infomation
Citrazine acid is an aromatic carboxylic acid that belongs to the pyridine class of compounds.
Citrazinic acid is a research compound used as a biochemical tool and a fluorescent probe. Its ability to inhibit 3-dehydroquinate dehydratase from Mycobacterium tuberculosis makes it a potential lead compound for the development of new anti-tuberculosis agents【L7】. The compound is also used in the synthesis of pyrimidinone and oxazinone derivatives. It is not approved for clinical use and is intended for laboratory research only【L7】.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H5NO4
Molecular Weight
155.11
Exact Mass
155.021
CAS #
99-11-6
PubChem CID
7425
Appearance
Off-white to light yellow solid powder
Density
1.7±0.1 g/cm3
Boiling Point
630.3±55.0 °C at 760 mmHg
Melting Point
>300 °C(lit.)
Flash Point
335.0±31.5 °C
Vapour Pressure
0.0±1.9 mmHg at 25°C
Index of Refraction
1.686
LogP
-1.5
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
1
Heavy Atom Count
11
Complexity
276
Defined Atom Stereocenter Count
0
InChi Key
CSGQJHQYWJLPKY-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H5NO4/c8-4-1-3(6(10)11)2-5(9)7-4/h1-2H,(H,10,11)(H2,7,8,9)
Chemical Name
2-hydroxy-6-oxo-1H-pyridine-4-carboxylic acid
Synonyms
2,6-Dihydroxyisonicotinate Kyselina citrazinova Citrazinic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 6.4470 mL 32.2352 mL 64.4704 mL
5 mM 1.2894 mL 6.4470 mL 12.8941 mL
10 mM 0.6447 mL 3.2235 mL 6.4470 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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