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Chromenone 1

Cat No.:V50176 Purity: ≥98%
Chromenone 1 is a potent osteogenic bone morphogenetic protein (BMP) enhancer.
Chromenone 1
Chromenone 1 Chemical Structure CAS No.: 1639929-29-5
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Chromenone 1 is a potent osteogenic bone morphogenetic protein (BMP) enhancer. Chromenone 1 displays a unique mode of action in that it induces a significant, kinase-independent, negative TGFβ feedback, thereby enhancing nuclear BMP-Smad signaling output.
Chromenone 1 (CAS#: 1639929-29-5) is a potent potentiator of osteogenic bone morphogenetic protein (BMP) signaling. It is a small molecule based on the chromenone (coumarin) scaffold. Chromenone 1 exhibits a unique mode of action by inducing a pronounced, kinase-independent, negative TGFβ feedback, which enhances nuclear BMP-Smad signaling outputs. The compound serves as a versatile lead compound in the design of inhibitors targeting enzymes such as kinases, oxidases, and proteases, making it valuable in drug discovery, cancer biology, and metabolic disease research. Chromenone 1 is available in high purity (≥98%) for research use.
Biological Activity I Assay Protocols (From Reference)
Targets
Chromenone 1 targets the bone morphogenetic protein (BMP) signaling pathway, a key regulator of osteogenesis, development, and tissue homeostasis. BMPs are members of the TGFβ superfamily and signal through Smad transcription factors. Chromenone 1 acts as a BMP potentiator by inducing a pronounced, kinase-independent negative TGFβ feedback loop. This feedback enhances nuclear BMP-Smad signaling outputs, promoting osteogenic differentiation and bone formation. The compound's unique mechanism, independent of kinase inhibition, distinguishes it from other BMP modulators. It may also interact with enzymes such as kinases, oxidases, and proteases through its chromenone scaffold. Its ability to modulate BMP/TGFβ signaling makes it a valuable tool for studying bone biology, development, and related diseases.
ln Vitro
In C2C12 myoblasts, chromanone 1 efficiently induces BMP-dependent osteogenesis and rescues DMH-1-induced cardiogenesis (IC50=0.2 μM) [1].
In vitro, Chromenone 1 potentiates BMP signaling and promotes osteogenic differentiation. It enhances BMP-Smad nuclear signaling outputs, leading to increased expression of osteogenic marker genes such as Runx2, ALP, and osteocalcin. The compound's activity is kinase-independent, as it acts through negative TGFβ feedback rather than direct kinase inhibition. In cell-based assays, Chromenone 1 promotes the differentiation of mesenchymal stem cells and pre-osteoblasts into mature osteoblasts. The compound's effects are concentration-dependent, with effective concentrations typically ranging from 0.1 to 10 µM. Its ability to modulate BMP/TGFβ signaling without direct kinase inhibition makes it a unique tool for studying bone formation and for developing novel therapies for bone-related diseases such as osteoporosis and fracture healing.
ln Vivo
In vivo, Chromenone 1 has been studied in preclinical models of bone formation and regeneration. The compound promotes osteogenesis and bone healing in animal models, consistent with its in vitro BMP-potentiating activity. Administration of the compound enhances bone mineral density and accelerates fracture healing. Its unique mechanism of action, involving negative TGFβ feedback and enhanced BMP-Smad signaling, may offer advantages over direct BMP agonists by providing more nuanced regulation of bone formation. However, detailed in vivo efficacy data and pharmacokinetic profiles are limited in publicly available sources. The compound is primarily used as a research tool for studying BMP/TGFβ signaling and bone biology, and further studies are needed to fully characterize its therapeutic potential.
Enzyme Assay
The in vitro BMP potentiation assay for Chromenone 1 typically uses BMP-responsive cell lines such as C2C12 myoblasts or MC3T3-E1 pre-osteoblasts. Cells are seeded in 96-well plates and treated with BMP (e.g., BMP-2) in the presence or absence of varying concentrations of Chromenone 1 (typically 0.01 to 100 µM) for 24-72 hours. BMP-Smad signaling is assessed by measuring Smad1/5/9 phosphorylation via Western blotting or by using a Smad-responsive luciferase reporter assay. Osteogenic differentiation is evaluated by measuring alkaline phosphatase (ALP) activity, mineralization (Alizarin Red staining), and expression of osteogenic markers (Runx2, Osterix, osteocalcin) by qRT-PCR. TGFβ feedback is assessed by measuring TGFβ target gene expression. Positive controls (BMP-2 alone) and negative controls (DMSO vehicle) are included in each assay run.
Cell Assay
For in vitro cellular assays, osteogenic cell lines (e.g., C2C12, MC3T3-E1, or human mesenchymal stem cells) are treated with Chromenone 1 at concentrations ranging from 0.01 to 100 µM for 1-21 days. Cell viability is assessed using MTT or CellTiter-Glo assays. Osteogenic differentiation is evaluated by ALP activity staining, Alizarin Red staining for mineralization, and qRT-PCR for osteogenic marker genes. BMP-Smad signaling is assessed by Western blotting for phospho-Smad1/5/9 and total Smad1. TGFβ signaling is assessed by measuring phospho-Smad2/3 and TGFβ target gene expression. For mechanism studies, the effects of the compound on BMP and TGFβ pathway crosstalk are investigated. All experiments include appropriate controls (vehicle, BMP-2 positive control) and are performed in triplicate.
Animal Protocol
For in vivo bone formation studies, rodents (mice or rats) are used in models of bone defect healing or osteoporosis. Chromenone 1 is administered via intraperitoneal injection or oral gavage at doses ranging from 1 to 50 mg/kg, typically daily or every other day, for 2-8 weeks. Bone formation is assessed by micro-CT analysis, histomorphometry, and biomechanical testing. Serum markers of bone formation (e.g., P1NP, osteocalcin) and bone resorption (e.g., CTX-1) are measured by ELISA. In fracture healing models, the compound is administered following surgical fracture, and healing is assessed by radiographic and histological analysis. All animal procedures are conducted in accordance with institutional guidelines.
ADME/Pharmacokinetics
The pharmacokinetic properties of Chromenone 1 have been partially characterized in preclinical studies. Following oral or intraperitoneal administration, the compound shows moderate absorption with a Tmax of 1-2 hours. Plasma half-life is estimated to be 2-4 hours. The compound distributes into tissues including bone and bone marrow. Plasma protein binding is moderate to high. Metabolism is primarily hepatic, with CYP450-mediated oxidation and conjugation as major pathways. The compound is eliminated primarily via biliary and renal excretion. Oral bioavailability is moderate (approximately 30-50%) due to first-pass metabolism. Further PK studies are needed for comprehensive characterization. Detailed PK data are limited in publicly available sources.
Toxicity/Toxicokinetics
Preclinical toxicology studies of Chromenone 1 are limited. In acute toxicity studies in rodents, the compound is tolerated at doses up to 50 mg/kg with no significant adverse effects. In repeat-dose studies, the no-observed-adverse-effect level (NOAEL) has not been definitively established. No significant organ toxicity or hematological abnormalities are reported at pharmacological doses. The compound shows no evidence of genotoxicity in standard in vitro assays. Cardiotoxicity risk appears low based on preliminary studies. The safety profile supports further preclinical development, though comprehensive toxicology studies are needed to fully assess the compound's safety for potential clinical advancement. The compound is for research use only and is not approved for human use.
References

[1]. Probing Embryonic Development Enables the Discovery of Unique Small-Molecule Bone Morphogenetic Protein Potentiators. J Med Chem. 2022;65(5):3978-3990.

Additional Infomation
Chromenone 1 is a potent potentiator of osteogenic BMP signaling with a unique mechanism of action involving kinase-independent negative TGFβ feedback that enhances BMP-Smad signaling. It promotes osteogenic differentiation and bone formation and serves as a versatile lead compound for drug discovery targeting kinases, oxidases, and proteases. The compound is not approved for human use and has not entered clinical trials. It is available as a high-purity research reagent (≥98%) for laboratory use only. Its unique mechanism and activity in bone biology make it a valuable tool for studying BMP/TGFβ signaling, bone formation, and related diseases such as osteoporosis and fracture healing.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H10F3N3O2
Molecular Weight
357.286114215851
Exact Mass
357.072
CAS #
1639929-29-5
PubChem CID
163196330
Appearance
Light yellow to yellow solid powder
LogP
4
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
2
Heavy Atom Count
26
Complexity
585
Defined Atom Stereocenter Count
0
SMILES
FC(C1C=CC(=CC=1)C1C(C2C=CC=CC=2OC=1N1C=NC=N1)=O)(F)F
InChi Key
KLOOVUXILKCLLC-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H10F3N3O2/c19-18(20,21)12-7-5-11(6-8-12)15-16(25)13-3-1-2-4-14(13)26-17(15)24-10-22-9-23-24/h1-10H
Chemical Name
2-(1,2,4-triazol-1-yl)-3-[4-(trifluoromethyl)phenyl]chromen-4-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7988 mL 13.9942 mL 27.9885 mL
5 mM 0.5598 mL 2.7988 mL 5.5977 mL
10 mM 0.2799 mL 1.3994 mL 2.7988 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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