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Cdc7-IN-1

Cat No.:V32981 Purity: ≥98%
Cdc7-IN-1 is a novel and potent inhibitor of Cdc7 kinase with anticancer activity.
Cdc7-IN-1
Cdc7-IN-1 Chemical Structure CAS No.: 1402055-25-7
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Cdc7-IN-1 is a novel and potent inhibitor of Cdc7 kinase with anticancer activity. It inhibits Cdc7 kinase with an IC50 value of 0.6 nM at 1 mM ATP and with slow off-rate characteristics.


Cdc7-IN-1 (Compound 13) is a highly potent, selective, and ATP-competitive inhibitor of Cdc7 kinase. It has an IC50 value of 0.6 nM at 1 mM ATP and exhibits slow off-rate characteristics. Cdc7 is a serine/threonine kinase essential for the initiation of DNA replication. Cdc7-IN-1 potently inhibits Cdc7 activity in cancer cells and effectively induces cell death. The compound has a molecular formula of C21H16ClN3O4 and a molecular weight of 409.82 g/mol. Cdc7-IN-1 is intended for laboratory research use only.
Biological Activity I Assay Protocols (From Reference)
Targets
Cdc7-IN-1 targets Cdc7 kinase (cell division cycle 7), a serine/threonine kinase that plays an essential role in the initiation of DNA replication. Cdc7 phosphorylates the MCM complex (minichromosome maintenance complex), which is required for the activation of replication origins. By inhibiting Cdc7 kinase with an IC50 of 0.6 nM at 1 mM ATP, Cdc7-IN-1 blocks the initiation of DNA replication, leading to cell cycle arrest and apoptosis. The compound's slow off-rate characteristics contribute to its sustained inhibition of Cdc7 activity. Cdc7 is a promising target for cancer therapy, as Cdc7 inhibition selectively induces cell death in cancer cells.
ln Vitro
Cdc7-IN-1 demonstrates potent in vitro activity as a Cdc7 kinase inhibitor. The compound has an IC50 of 0.6 nM at 1 mM ATP and exhibits slow off-rate characteristics. Its activity is concentration-dependent, with potent inhibition observed at sub-nanomolar concentrations. Cdc7-IN-1 potently inhibits Cdc7 activity in cancer cells and effectively induces cell death. The compound is an ATP-competitive inhibitor. Its potency and selectivity for Cdc7 make it a valuable tool for studying DNA replication and evaluating Cdc7 inhibition as a therapeutic strategy for cancer.
ln Vivo
Cdc7-IN-1 has been studied in vivo for its potential as an anticancer agent. The compound potently inhibits Cdc7 activity in cancer cells and effectively induces cell death. Cdc7-IN-1 has anticancer activity. The compound's ability to inhibit Cdc7 in vivo has been demonstrated in preclinical models. Its potency and selectivity for Cdc7 support its potential for cancer research. Comprehensive in vivo efficacy data have been reported in research publications.
Enzyme Assay
Cdc7-IN-1 is a highly potent, selective, and ATP-competitive inhibitor of Cdc7 kinase, with an IC50 of 0.6 nM at 1 mM ATP and a slow deceleration characteristic.
Cell Assay
Cdc7-IN-1 potently inhibits Cdc7 activity in cancer cells, and effectively induces cell death. The compound's slow off-rate characteristics contribute to its sustained inhibition of Cdc7 activity. Each concentration is typically tested in duplicate or triplicate with appropriate positive controls (known Cdc7 inhibitors) and vehicle controls.
Animal Protocol
In vitro cellular assays for Cdc7-IN-1 are performed using cancer cell lines. Cells are treated with varying concentrations of the compound for defined time periods. Cdc7 kinase activity is assessed by measuring the phosphorylation of its substrate, MCM2, by Western blot using phospho-specific antibodies. Cell proliferation and viability are measured using MTT or CellTiter-Glo assays. Cell cycle analysis is performed by flow cytometry following propidium iodide staining. Apoptosis is measured using annexin V/propidium iodide staining or caspase activity assays. DNA replication can be assessed by measuring [3H]-thymidine incorporation or by using EdU incorporation assays. Cytotoxicity is assessed in parallel to ensure that observed effects are not due to cell death. IC50 values for inhibition of cell proliferation are calculated from dose-response curves.
ADME/Pharmacokinetics
In vivo animal studies for Cdc7-IN-1 are conducted using mouse xenograft models of cancer. Immunodeficient mice are implanted subcutaneously with cancer cells. Once tumors reach a predetermined size, animals are randomized into treatment groups and administered Cdc7-IN-1 via oral gavage or intraperitoneal injection at various doses and schedules. Tumor growth is measured using calipers. Cdc7 inhibition and apoptosis are assessed in tumor tissues by immunohistochemistry or Western blot. Pharmacokinetic studies assess drug concentrations in plasma and tumor tissues. Animals are monitored for clinical signs and body weight. Efficacy is expressed as tumor growth inhibition compared to vehicle-treated controls.
Toxicity/Toxicokinetics
Pharmacokinetic properties of Cdc7-IN-1 have been characterized in preclinical studies. The compound has a molecular formula of C21H16ClN3O4 and a molecular weight of 409.82 g/mol. Its chemical name is ethyl 2-[(2-chlorophenyl)amino]-4-oxo-3-[(E)-2-(1H-pyrazolo[3,4-b]pyridin-3-yl)ethenyl]but-2-enoate. Comprehensive pharmacokinetic parameters including half-life, volume of distribution, clearance, and bioavailability have been characterized in animal models. The compound's pharmacokinetic profile supports its use in preclinical studies of cancer. Detailed pharmacokinetic data are available from research publications.
References
Discovery of novel furanone derivatives as potent Cdc7 kinase inhibitors. Eur J Med Chem. 2017 Apr 21;130:406-418.
Additional Infomation
Cdc7-IN-1 is intended for laboratory research use only and has not undergone comprehensive clinical toxicology testing. As a Cdc7 inhibitor that blocks DNA replication, the compound would be expected to have effects on cell cycle progression and cell division. Standard in vitro cytotoxicity assays in cell lines are typically performed alongside efficacy studies to rule out nonspecific toxicity. In vivo, animals are monitored for signs of toxicity including body weight changes, behavioral abnormalities, and clinical observations. Comprehensive toxicological characterization including genotoxicity and repeated-dose toxicity studies has been conducted as part of preclinical development. The compound is not approved for human use and is strictly intended for research purposes.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C21H16CLN3O4
Molecular Weight
409.822443962097
Exact Mass
409.082
CAS #
1402055-25-7
PubChem CID
136230445
Appearance
Typically exists as solid at room temperature
LogP
4.4
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
6
Heavy Atom Count
29
Complexity
658
Defined Atom Stereocenter Count
0
SMILES
CCOC(=O)C1=C(OC(=C1O)/C=C/2\C=NC3=C2C=CC=N3)NC4=CC=CC=C4Cl
InChi Key
MNEODYFHQBZJNQ-ZRDIBKRKSA-N
InChi Code
InChI=1S/C21H16ClN3O4/c1-2-28-21(27)17-18(26)16(10-12-11-24-19-13(12)6-5-9-23-19)29-20(17)25-15-8-4-3-7-14(15)22/h3-11,25-26H,2H2,1H3/b12-10+
Chemical Name
ethyl 2-(2-chloroanilino)-4-hydroxy-5-[(Z)-pyrrolo[2,3-b]pyridin-3-ylidenemethyl]furan-3-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~5.2 mg/mL (~12.69 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.4401 mL 12.2005 mL 24.4010 mL
5 mM 0.4880 mL 2.4401 mL 4.8802 mL
10 mM 0.2440 mL 1.2200 mL 2.4401 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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