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Cbz-B3A

Alias: CbzB3A; Cbz B3A; Cbz-B3A
Cat No.:V17682 Purity: ≥98%
Cbz-B3A is a potent and specific inhibitor of mTORC1 transduction, binding to ubiquitin 1, 2, and 4.
Cbz-B3A
Cbz-B3A Chemical Structure CAS No.: 1884710-81-9
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
100mg
Other Sizes
Official Supplier of:
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Product Description
Cbz-B3A is a potent and specific inhibitor of mTORC1 transduction, binding to ubiquitin 1, 2, and 4. Cbz-B3A can also inhibit the phosphorylation of eIF4E-binding protein.
Cbz-B3A is a potent and selective inhibitor of mTORC1 signaling. It is a benzyloxycarbonyl (Cbz)-protected β-amino acid derivative. It has a molecular formula of C35H58N6O9 and a molecular weight of 706.87. It inhibits the phosphorylation of eIF4E-binding protein 1 (4EBP1) and blocks translation by 68%.
Biological Activity I Assay Protocols (From Reference)
Targets
Cbz-B3A targets the mTORC1 signaling pathway. It inhibits the phosphorylation of eIF4E-binding protein 1 (4EBP1) and p70S6 kinase (p70S6k) Thr-389. It appears to bind to ubiquilins 1, 2, and 4. By inhibiting mTORC1 signaling, it blocks cap-dependent translation.
ln Vitro
In some human leukemia cell lines, Cbz-B3A slows cell proliferation but is not cytotoxic. Cbz-B3A has a stronger effect on 4EBP1 phosphorylation than p70S6k, when compared to rapamycin. Cbz-B3A uses ubiquitin to block mTOR. A dose-dependent reduction in [35S]methionine/cysteine incorporation into proteins is seen by Cbz-B3A, with an EC50 of roughly 3 μM and a maximal inhibition of 68% at 10 μM.
Cbz-B3A is a potent inhibitor of mTORC1 signaling. At 10 μM, it inhibits the phosphorylation of 4EBP1 and p70S6k Thr-389. It blocks translation by 68%. It slows cellular growth of some human leukemia cell lines but is not cytotoxic. It has a larger effect on the phosphorylation of 4EBP1 than p70S6k compared to rapamycin.
ln Vivo
Specific in vivo activity data for Cbz-B3A is not extensively detailed in the available literature. As a research compound, its in vivo effects are primarily studied in the context of mTORC1 inhibition and its impact on cell growth and translation. Further studies are needed to fully characterize its in vivo efficacy and pharmacokinetic properties.
Enzyme Assay
Cbz-B3A's activity as an mTORC1 inhibitor is assessed using in vitro kinase assays or cell-based assays measuring mTORC1 activity. The compound's ability to inhibit the phosphorylation of 4EBP1 and p70S6k is assessed by Western blot analysis. Its effects on translation can be measured using assays such as polysome profiling or puromycin incorporation.
Cell Assay
Cellular assays for Cbz-B3A involve treating cells with the compound and measuring mTORC1 signaling, translation, and cell growth. The phosphorylation of 4EBP1 and p70S6k is assessed by Western blot. Cell proliferation and viability are measured using MTT or CellTiter-Glo assays.
Animal Protocol
In vivo animal model protocols for Cbz-B3A would involve its administration to animal models to study the role of mTORC1 in various diseases. The compound's effects on mTORC1 signaling, translation, and disease phenotypes would be assessed.
ADME/Pharmacokinetics
Cbz-B3A has a molecular weight of 706.87 and a molecular formula of C35H58N6O9. Specific pharmacokinetic data is not extensively detailed in the available literature. As a small molecule inhibitor, its pharmacokinetic properties would need to be evaluated in preclinical studies.
Toxicity/Toxicokinetics
The toxicological profile of Cbz-B3A has not been extensively characterized. As a research compound, it is intended for research use only and not for human consumption. Standard safety assessments would be required for clinical development.
References

[1]. Ubiquilin-mediated Small Molecule Inhibition of Mammalian Target of Rapamycin Complex 1 (mTORC1) Signaling. J Biol Chem. 2016 Mar 4;291(10):5221-33.

Additional Infomation
Cbz-B3A (CAS# 1884710-81-9) is a research compound used to study mTORC1 signaling and its role in cell growth, translation, and cancer. It is a potent and selective inhibitor of mTORC1 signaling that inhibits 4EBP1 phosphorylation and blocks translation. It is not approved for clinical use and is supplied as a research chemical.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C35H58N6O9
Molecular Weight
706.869829654694
Exact Mass
706.426
CAS #
1884710-81-9
PubChem CID
124203916
Appearance
White to off-white solid powder
LogP
6.4
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
24
Heavy Atom Count
50
Complexity
1070
Defined Atom Stereocenter Count
1
SMILES
O(C(N[C@H](C(NCCCCCCNC(=O)OCC1C=CC=CC=1)=O)CCC/N=C(\NC(=O)OC(C)(C)C)/NC(=O)OC(C)(C)C)=O)C(C)(C)C
InChi Key
JGEWUYSTHGIDHO-SANMLTNESA-N
InChi Code
InChI=1S/C35H58N6O9/c1-33(2,3)48-30(44)39-26(20-17-23-37-28(40-31(45)49-34(4,5)6)41-32(46)50-35(7,8)9)27(42)36-21-15-10-11-16-22-38-29(43)47-24-25-18-13-12-14-19-25/h12-14,18-19,26H,10-11,15-17,20-24H2,1-9H3,(H,36,42)(H,38,43)(H,39,44)(H2,37,40,41,45,46)/t26-/m0/s1
Chemical Name
benzyl N-[6-[[(2S)-5-[bis[(2-methylpropan-2-yl)oxycarbonylamino]methylideneamino]-2-[(2-methylpropan-2-yl)oxycarbonylamino]pentanoyl]amino]hexyl]carbamate
Synonyms
CbzB3A; Cbz B3A; Cbz-B3A
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.4147 mL 7.0734 mL 14.1469 mL
5 mM 0.2829 mL 1.4147 mL 2.8294 mL
10 mM 0.1415 mL 0.7073 mL 1.4147 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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