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Bis-PEG13-NHS ester

Cat No.:V37905 Purity: ≥98%
Bis-PEG13-NHS ester is a PROTAC bridge, belonging to the Polyethylene glycol (PEG) category and the Alkyl/ether class.
Bis-PEG13-NHS ester
Bis-PEG13-NHS ester Chemical Structure CAS No.: 2221949-00-2
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
250mg
Other Sizes

Other Forms of Bis-PEG13-NHS ester:

  • Bis-PEG9-NHS ester
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Bis-PEG13-NHS ester is a PROTAC bridge, belonging to the Polyethylene glycol (PEG) category and the Alkyl/ether class. Bis-PEG13-NHS ester may be utilized to prepare a veriety of PROTAC protein degraders. Bis-PEG13-NHS ester is a cleavable ADC bridge used for the synthesis of antibody active molecule conjugates (ADCs).
Bis-PEG13-NHS ester (CAS 2221949-00-2) is a homobifunctional PEG-based crosslinker containing 13 ethylene glycol units and two terminal N-hydroxysuccinimide (NHS) ester groups. With a molecular weight of 887.22 g/mol and the formula C₃₈H₆₂N₂O₂₁, this compound is used to crosslink proteins, peptides, and other amine-containing molecules. The NHS ester groups react with primary amines at pH 7-9 to form stable amide bonds. The hydrophilic PEG spacer enhances the solubility of the crosslinked conjugates and reduces non-specific interactions. Bis-PEG13-NHS ester is a valuable tool for bioconjugation and the synthesis of PEGylated proteins.
Biological Activity I Assay Protocols (From Reference)
Targets
Bis-PEG13-NHS ester targets primary amines on proteins, peptides, and other biomolecules. The NHS ester groups react efficiently with primary amines, such as the ε-amino group of lysine residues or the N-terminal amino group of polypeptides, to form stable amide bonds. The 13-unit PEG chain provides a long, hydrophilic spacer between the two reactive groups, allowing for the crosslinking of proteins with minimal steric hindrance. The PEG spacer also enhances the solubility and reduces the immunogenicity of the crosslinked conjugates.
ln Vitro
Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC targets and selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system. An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC.
In vitro, Bis-PEG13-NHS ester is used to crosslink proteins and peptides for various applications, including the preparation of protein-protein conjugates, protein-PEG conjugates, and protein-drug conjugates. The compound's long PEG spacer allows for the formation of flexible and soluble crosslinked products. The NHS ester groups react rapidly with amines at physiological pH, enabling efficient crosslinking under mild conditions. The crosslinked products can be analyzed by SDS-PAGE and mass spectrometry.
ln Vivo
In vivo, Bis-PEG13-NHS ester-based crosslinked proteins have the potential to demonstrate improved pharmacokinetic properties due to the PEG spacer. The PEG chain increases the hydrodynamic volume of the protein, reducing renal clearance and prolonging the half-life in circulation. The PEG spacer also minimizes opsonization and recognition by the reticuloendothelial system, reducing immunogenicity. These properties make Bis-PEG13-NHS ester a valuable tool for the development of PEGylated therapeutics.
Enzyme Assay
In vitro crosslinking assays for Bis-PEG13-NHS ester are performed by incubating the compound with a protein or peptide of interest in a buffer at pH 7-8. The reaction is typically carried out at room temperature for 1-2 hours. The extent of crosslinking is assessed by SDS-PAGE, size-exclusion chromatography, or mass spectrometry. The efficiency of crosslinking can be optimized by varying the molar ratio of the compound to the protein.
Cell Assay
In vitro cellular experiments for Bis-PEG13-NHS ester-based conjugates are performed to evaluate their biological activity and cytotoxicity. Cells are treated with the crosslinked protein or conjugate, and the effects on cell viability, proliferation, and function are assessed. The cellular uptake of the conjugate can be assessed using fluorescently labeled proteins. These experiments are essential for characterizing the biological properties of the crosslinked products.
Animal Protocol
In vivo animal studies for Bis-PEG13-NHS ester-based conjugates are conducted using mouse or rat models. The conjugate is administered via intravenous, intraperitoneal, or subcutaneous injection. The pharmacokinetic properties, including half-life and bioavailability, are evaluated from plasma samples. The efficacy of the conjugate is evaluated by measuring the desired therapeutic outcome. The compound's safety and tolerability are also assessed.
ADME/Pharmacokinetics
The pharmacokinetic properties of Bis-PEG13-NHS ester-based conjugates are improved by the PEG spacer. The hydrophilic PEG chain increases the hydrodynamic volume, reducing renal clearance and prolonging the half-life in circulation. The PEG chain also minimizes opsonization and recognition by the reticuloendothelial system. These properties result in improved systemic exposure and reduced immunogenicity.
Toxicity/Toxicokinetics
The toxicity profile of Bis-PEG13-NHS ester-based conjugates is generally favorable due to the biocompatibility of PEG. However, high doses of PEGylated compounds can sometimes lead to vacuolation in tissues such as the renal proximal tubules. In preclinical studies, toxicity is assessed by monitoring body weight, clinical signs, and histopathological changes in major organs.
References

[1]. Highly potent multimeric e-selectin antagonists. WO2018068010A1.

Additional Infomation
Bis-PEG13-NHS ester is a homobifunctional PEG-based crosslinker used for the crosslinking of proteins, peptides, and other amine-containing molecules. Its 13-unit PEG chain provides a long, hydrophilic spacer that enhances the solubility and pharmacokinetic properties of the crosslinked conjugates. The NHS ester groups react efficiently with primary amines, enabling mild and efficient crosslinking. As a research tool, Bis-PEG13-NHS ester is essential for the development of PEGylated proteins, protein-protein conjugates, and other bioconjugates.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C38H64N2O21
Molecular Weight
884.915574073792
Exact Mass
884.4
CAS #
2221949-00-2
Related CAS #
1008402-79-6;
PubChem CID
75535126
Appearance
Colorless to off-white solid-liquid Mixture
LogP
-3.8
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
21
Rotatable Bond Count
46
Heavy Atom Count
61
Complexity
1080
Defined Atom Stereocenter Count
0
SMILES
C1CC(=O)N(C1=O)OC(=O)CCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCC(=O)ON2C(=O)CCC2=O
InChi Key
OVDFFVRBNAHLOH-UHFFFAOYSA-N
InChi Code
InChI=1S/C38H64N2O21/c41-33-1-2-34(42)39(33)60-37(45)5-7-47-9-11-49-13-15-51-17-19-53-21-23-55-25-27-57-29-31-59-32-30-58-28-26-56-24-22-54-20-18-52-16-14-50-12-10-48-8-6-38(46)61-40-35(43)3-4-36(40)44/h1-32H2
Chemical Name
(2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-(2,5-dioxopyrrolidin-1-yl)oxy-3-oxopropoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1300 mL 5.6502 mL 11.3005 mL
5 mM 0.2260 mL 1.1300 mL 2.2601 mL
10 mM 0.1130 mL 0.5650 mL 1.1300 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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