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Benzyl-PEG7-alcohol

Cat No.:V6156 Purity: ≥98%
BnO-PEG6-OH is a non-cleavable (non-degradable) ADC linker containing 6 Polyethylene glycol (PEG) units, which may be utilized to prepare active Antibody-drug conjugates (ADC).
Benzyl-PEG7-alcohol
Benzyl-PEG7-alcohol Chemical Structure CAS No.: 24342-68-5
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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500mg
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Product Description
BnO-PEG6-OH is a non-cleavable (non-degradable) ADC linker containing 6 Polyethylene glycol (PEG) units, which may be utilized to prepare active Antibody-drug conjugates (ADC). BnO-PEG6-OH is also a PROTAC (PROteolysis TArgeting Chimera) linker, belonging to the Polyethylene glycol (PEG) category and may be utilized to prepare PROTAC protein degraders.
Benzyl-PEG7-alcohol (BnO-PEG6-OH) (CAS#: 24342-68-5) is a monodisperse PEG linker containing a benzyl protecting group and a primary alcohol group. It has a molecular weight of 372.5 g/mol and a molecular formula of C19H32O7. Benzyl-PEG7-alcohol is a non-cleavable ADC linker containing 6 PEG units, which may be utilized to prepare active Antibody-drug conjugates (ADCs). The benzyl group is an alcohol protecting group that can be removed via hydrogenolysis. The primary alcohol group can be further functionalized for conjugation to other molecules.
Biological Activity I Assay Protocols (From Reference)
Targets
Benzyl-PEG7-alcohol does not have a specific biological target, as it is a chemical linker. Its function is to serve as a covalent connector between molecular components in the synthesis of ADCs. The benzyl group is a protecting group that can be removed to reveal a free alcohol for further functionalization. The primary alcohol group can be converted to a more reactive leaving group or oxidized to an aldehyde or carboxylic acid for conjugation to other molecules. The hydrophilic PEG spacer enhances solubility and reduces steric hindrance between the conjugated components.
ln Vitro
An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC. Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system [1].
Benzyl-PEG7-alcohol, as a linker, does not possess any direct in vitro biological activity. Its function is to enable the synthesis of bioactive conjugates. The in vitro activity of this linker is assessed indirectly through the characterization of the final conjugates it helps to create. For instance, when used to synthesize an ADC, the activity of the conjugate is evaluated in cell-based assays for target binding, internalization, and cytotoxicity. The PEG linker contributes to the conjugate's overall activity by enhancing its solubility and providing the necessary spacing between the antibody and the drug.
ln Vivo
Benzyl-PEG7-alcohol is not intended for in vivo use as a standalone compound. Its relevance in vivo is as a component of larger conjugates, such as ADCs. In these contexts, the hydrophilic PEG spacer contributes to the overall pharmacokinetic profile of the conjugate by improving solubility and reducing aggregation. However, the specific in vivo activity—such as tumor regression—is determined by the conjugate's warhead and targeting ligand, not the linker itself. The linker's role is to stably connect the functional components.
Enzyme Assay
There are no specific in vitro enzyme or receptor binding assays for Benzyl-PEG7-alcohol, as it is a chemical reagent. Its characterization is performed using analytical chemistry techniques such as NMR, HPLC, and MS to verify its structure and purity. The functionality of the primary alcohol group can be confirmed by reacting it with a model compound and monitoring the formation of the product by HPLC or LC-MS. The benzyl protecting group can be removed by hydrogenolysis, and the deprotection can be confirmed by NMR or HPLC. These are quality control steps, not biological assays.
Cell Assay
There are no standard in vitro cell-based assays for Benzyl-PEG7-alcohol itself, as it is not a bioactive molecule. Its use in cell biology is indirect, as a reagent for constructing bioconjugates. For example, when used to create an ADC, the ADC's ability to kill cancer cells would be evaluated in cell-based assays. The linker's role is to ensure the ADC is functional and stable. However, there is no direct assay for the linker in cells. Its purity and reactivity are confirmed through chemical assays before use in any biological experiment.
Animal Protocol
Benzyl-PEG7-alcohol is not used in in vivo animal experiments as a standalone compound. It is a synthetic building block for creating bioconjugates such as ADCs. Animal studies would be conducted on the final, larger conjugates that incorporate this linker. In such studies, the linker's contribution to the overall pharmacokinetic and pharmacodynamic profile of the conjugate might be assessed by comparing it to conjugates made with different linkers. However, there is no standard animal protocol for the linker itself. Its use is limited to the research and development phase for synthesizing test articles.
ADME/Pharmacokinetics
Benzyl-PEG7-alcohol has a molecular weight of 372.5 g/mol and a molecular formula of C19H32O7. It has a CAS number of 24342-68-5. It is a solid compound with a purity of 98%. It has a density of 1.097 g/cm³. For storage, it is recommended to keep the powder at -20°C. Detailed pharmacokinetic properties are not relevant as the compound is a linker, not a therapeutic agent. As a research chemical, its stability is maintained by proper storage as a dry powder.
Toxicity/Toxicokinetics
Benzyl-PEG7-alcohol is considered to have low toxicity, consistent with other PEG-based linkers. PEG polymers are widely regarded as biocompatible, non-toxic, and non-immunogenic. The compound is classified as a research reagent, and standard laboratory safety precautions should be followed when handling it. Its toxicity profile has not been extensively studied, but due to its intended use and chemical class, it is not expected to be acutely toxic. As with all chemicals, it should be handled with appropriate personal protective equipment in a well-ventilated area.
References

[1]. Antibody drug conjugate, intermediate, preparation method, pharmaceutical composition and uses there. Patent WO2016197946A1.

[2]. Small-molecule PROTACs: An emerging and promising approach for the development of targeted therapy drugs. EBioMedicine. 2018 Oct;36:553-562.

Additional Infomation
Benzyl-PEG7-alcohol is a research-use-only reagent and is not a drug, nor is it approved for any clinical or therapeutic use. It is a monodisperse PEG linker containing a benzyl protecting group and a primary alcohol group. It is a non-cleavable ADC linker containing 6 PEG units, which may be utilized to prepare active Antibody-drug conjugates (ADCs). The benzyl group is an alcohol protecting group that can be removed via hydrogenolysis. The primary alcohol group can be further functionalized for conjugation to other molecules. It is a valuable tool for medicinal chemists and chemical biologists working on targeted drug delivery and bioconjugation.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H32O7
Molecular Weight
372.4532
Exact Mass
372.214
CAS #
24342-68-5
PubChem CID
11164646
Appearance
Colorless to light yellow liquid(Density:1.097 g/cm3)
Density
1.1±0.1 g/cm3
Boiling Point
473.6±40.0 °C at 760 mmHg
Flash Point
240.3±27.3 °C
Vapour Pressure
0.0±1.2 mmHg at 25°C
Index of Refraction
1.494
LogP
-0.54
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
19
Heavy Atom Count
26
Complexity
273
Defined Atom Stereocenter Count
0
SMILES
O(C([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C1C([H])=C([H])C([H])=C([H])C=1[H])C([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])O[H]
InChi Key
VVBQKDDPSXBMMZ-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H32O7/c20-6-7-21-8-9-22-10-11-23-12-13-24-14-15-25-16-17-26-18-19-4-2-1-3-5-19/h1-5,20H,6-18H2
Chemical Name
2-[2-[2-[2-[2-(2-phenylmethoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethanol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6849 mL 13.4246 mL 26.8492 mL
5 mM 0.5370 mL 2.6849 mL 5.3698 mL
10 mM 0.2685 mL 1.3425 mL 2.6849 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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