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Bakkenolide A

Cat No.:V31956 Purity: ≥98%
Bakkenolide A is a naturally occurring compound found in Petasites tricholobus.
Bakkenolide A
Bakkenolide A Chemical Structure CAS No.: 19906-72-0
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Bakkenolide A is a naturally occurring compound found in Petasites tricholobus. Bakkenolide A can inhibit leukemia by regulating HDAC3 and PI3K/akt-related signaling pathways.
Bakkenolide A (CAS#: 19906-72-0) is a natural sesquiterpene lactone isolated from plants of the genus *Petasites* (such as *Petasites tricholobus*) and *Ligularia*. With the molecular formula C15H22O2 and a molecular weight of 234.33, it is a colorless crystalline solid. Bakkenolide A demonstrates a range of bioactivities, including antifeedant and growth inhibitory effects on insects. In mammalian systems, research indicates it possesses anticancer properties and can modulate inflammatory responses.
Biological Activity I Assay Protocols (From Reference)
Targets
Bakkenolide A targets multiple cellular pathways, with a key mechanism involving the inhibition of histone deacetylase 3 (HDAC3). It also modulates the PI3K/Akt signaling cascade. This regulation leads to the downregulation of key proteins in these pathways, including PI3K, PDK, PKC, and activated Akt. Furthermore, Bakkenolide A inactivates the NF-kappaB signaling pathway and suppresses the expression of IKKs, which contributes to its anti-inflammatory effects.
ln Vitro
In vitro, Bakkenolide A exhibits significant anticancer activity by reducing the viability of leukemia cells and inhibiting cell colony formation and invasion. Its activity is linked to the downregulation of HDAC3 expression. The compound also suppresses the expression of pro-inflammatory cytokines such as TNF-alpha, IL-1beta, TGF-beta1, and IFN-gamma in leukemia cells. Cytotoxicity tests confirm its marked cytotoxic activity against various cancer cell lines. It is soluble in DMSO up to 47 mg/mL.
ln Vivo
In vivo, Bakkenolide A has demonstrated protective effects against cancer and inflammatory conditions. One study showed it has a protective effect against cerebral ischemia/hypoxia in a mouse model. It also exhibits potent antifeedant and growth inhibitory effects on insects like the variegated cutworm. In pharmacokinetic studies in rats, Bakkenolide A is absorbed after oral administration, reaching a peak plasma concentration at 0.25 hours.
Enzyme Assay
Cell-free assays typically measure Bakkenolide A's inhibition of HDAC3 enzymatic activity. The compound is incubated with the HDAC3 enzyme and a fluorogenic substrate. After the reaction, the degree of deacetylation is measured, often using a fluorescence plate reader, and the IC50 value is calculated. Its ability to modulate the PI3K/Akt pathway can be assessed in cell-free kinase assays, where the compound's effect on the phosphorylation of specific peptide substrates by these kinases is measured.
Cell Assay
Cellular assays are performed using cancer cell lines, such as leukemia cells. Cells are cultured and treated with varying concentrations of Bakkenolide A for a defined period. Cell viability is assessed using standard assays like MTT or CellTiter-Glo. Cell colony formation and invasion are evaluated to determine its anti-proliferative and anti-metastatic potential. The mechanism is investigated by analyzing the expression of target proteins (e.g., HDAC3, PI3K, Akt) and inflammatory cytokines via Western blot or qPCR.
Animal Protocol
In vivo efficacy studies are conducted in animal models, such as rodents, to assess its anticancer and anti-inflammatory effects. For pharmacokinetic studies, a single dose of Bakkenolide A (e.g., 20 mg/kg orally or 2 mg/kg intravenously) is administered to rats. Blood samples are collected at various time points, and plasma concentrations are analyzed using a validated LC-MS/MS method. This method has a lower limit of quantification of 1 ng/mL.
ADME/Pharmacokinetics
Pharmacokinetic studies in rats reveal that after a single oral dose of 20 mg/kg, Bakkenolide A reaches a peak plasma concentration (Cmax) of 234.7 +/- 161 ng/mL at 0.25 hours. The area under the curve (AUC(0-24h)) is 535.8 +/- 223.7 h·ng/mL, and the elimination half-life (T1/2) is 5.0 +/- 0.36 hours. After intravenous administration of 2 mg/kg, the T1/2 is 5.8 +/- 0.7 hours. The oral bioavailability of Bakkenolide A in rats is calculated to be 15.7%.
Toxicity/Toxicokinetics
Bakkenolide A is classified as a toxic compound that can be a moderate to severe irritant to the skin and eyes. It is also considered toxic if swallowed and may pose a risk of serious damage to health with prolonged exposure. Safety data sheets recommend handling it with appropriate personal protective equipment, including chemical-resistant gloves and safety goggles. It is considered stable if stored as directed, and its decomposition can produce toxic fumes.
References

[1]. Bakkenolide A inhibits leukemia by regulation of HDAC3 and PI3K/Akt-related signaling pathways. Biomed Pharmacother. 2016 Oct;83:958-966.

Additional Infomation
Bakkenolone A is a sesquiterpene compound. It has been reported in Ligularia kanaitzensis, Ligularia dolichobotrys, and other organisms with relevant data. See also: Root (part) of Petasites hybridus.
Bakkenolide A (Fukinanolid) is a natural sesquiterpene lactone primarily investigated for its anticancer and anti-inflammatory properties. Its mechanism of action involves the inhibition of HDAC3 and modulation of the PI3K/Akt signaling pathway. It exhibits antifeedant activity against insects. The compound is a crystalline solid with a melting point of 148-149degC and is soluble in DMSO. It is a research tool and is not approved for human therapeutic or diagnostic use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H22O2
Molecular Weight
234.33398
Exact Mass
234.161
CAS #
19906-72-0
PubChem CID
442173
Appearance
White to off-white solid powder
Density
1.1±0.1 g/cm3
Boiling Point
360.7±31.0 °C at 760 mmHg
Melting Point
80-81 °C
Flash Point
150.7±22.2 °C
Vapour Pressure
0.0±0.8 mmHg at 25°C
Index of Refraction
1.518
LogP
3.67
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
0
Heavy Atom Count
17
Complexity
386
Defined Atom Stereocenter Count
4
SMILES
C[C@H]1CCC[C@H]2[C@@]1(C[C@]3(C2)C(=C)COC3=O)C
InChi Key
OVXAYHNZXBOVPV-QMGNLALYSA-N
InChi Code
InChI=1S/C15H22O2/c1-10-5-4-6-12-7-15(9-14(10,12)3)11(2)8-17-13(15)16/h10,12H,2,4-9H2,1,3H3/t10-,12+,14+,15+/m0/s1
Chemical Name
(2R,3aR,7S,7aR)-7,7a-dimethyl-4'-methylidenespiro[3,3a,4,5,6,7-hexahydro-1H-indene-2,3'-oxolane]-2'-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.2675 mL 21.3374 mL 42.6749 mL
5 mM 0.8535 mL 4.2675 mL 8.5350 mL
10 mM 0.4267 mL 2.1337 mL 4.2675 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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