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Obeldesivir (GS-5245; ATV-006)

Alias: Obeldesivir GS-5245 ATV-006 SHEN-26GS5245 ATV006 SHEN26
Cat No.:V43940 Purity: ≥98%
Obeldesivir (GS-5245; ATV-006; SHEN26) is anorally bioactive antiviral agent and ester prodrug of GS-441524 under investigation for COVID-19.
Obeldesivir (GS-5245; ATV-006)
Obeldesivir (GS-5245; ATV-006) Chemical Structure CAS No.: 2647441-36-7
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Obeldesivir (GS-5245; ATV-006; SHEN26) is an orally bioactive antiviral agent and ester prodrug of GS-441524 under investigation for COVID-19. It inhibits the replication of SARS-CoV-2 and may be used for SARS-CoV-2 treatment.
Obeldesivir (CAS: 2647441-36-7), also known as GS-5245 or ATV-006, is an oral prodrug of the parent nucleoside GS-441524, which targets the highly conserved RNA-dependent viral RNA polymerase (RdRp). The molecular formula is C16H19N5O5 and molecular weight is 361.35. Obeldesivir is an antiviral nucleoside analog that inhibits the replication of severe acute respiratory syndrome coronavirus (SARS-CoV-2) and its variants. It is an investigational antiviral drug under development for the treatment of viral infections, particularly COVID-19.
Biological Activity I Assay Protocols (From Reference)
Targets
Obeldesivir targets the RNA-dependent viral RNA polymerase (RdRp), a highly conserved enzyme essential for viral replication. As a prodrug of GS-441524, it is converted to the active triphosphate form that competes with natural nucleotides for incorporation into viral RNA, causing chain termination and inhibiting viral replication. This mechanism is similar to other nucleoside analogs used against RNA viruses. It effectively inhibits SARS-CoV-2 and its variants.
ln Vitro
Obeldesivir (0.001-100 μM; 48 h; Vero E6 cells) prevents both the pathogenic and real SARS-CoV-2 variants from replicating. Obeldesivir's effectiveness in blocking the replication of Delta and Omicron variants is improved overall by >4 and >12 times, respectively, with EC50 values of 0.349 μM and 0.106 μM[1].
In vitro, Obeldesivir effectively inhibits the replication of SARS-CoV-2 and its variants. As a nucleoside analog, it inhibits viral RNA-dependent RNA polymerase activity. The compound is an oral prodrug of GS-441524, which is the active parent nucleoside. These in vitro activities demonstrate its potential as an antiviral agent against SARS-CoV-2 and other RNA viruses.
ln Vivo
The pharmacokinetic profiles of beldesivir (5–25 mg/kg; po and iv) in Sprague Dawley rats are favorable, with a high oral bioavailability (F%) of 81.5% and a maximum blood concentration (Cmax) of 8.2 μM[1]. Obeldesivir (250–500 mg/kg; po; daily, 4 days; Ad5-hACE2 and hACE2 knock-in mice) has antiviral activity and prevents the replication of SARS-CoV-2 in mouse models[1]. K18-hACE2 mice are protected and lung damage is decreased by kg; po; daily, for 10 days[1]. In K18-hACE2 mice, obeldesivir (10–150 mg/kg; po; daily, for 3 days) decreases virus titers and lung damage brought on by Delta variant infection[1].
In vivo, Obeldesivir is an orally active antiviral agent. As a prodrug of GS-441524, it is designed for oral administration with improved bioavailability compared to the parent compound. It has shown efficacy in preclinical models of SARS-CoV-2 infection. It is under investigation for the treatment of COVID-19 and other viral infections.
Enzyme Assay
In vitro enzyme assays for Obeldesivir measure inhibition of viral RNA-dependent RNA polymerase (RdRp) activity. The compound is converted to its active triphosphate form, and its ability to inhibit RNA synthesis is assessed using purified RdRp enzyme and RNA templates. These assays characterize the compound's antiviral mechanism.
Cell Assay
Cell-based assays for Obeldesivir are conducted in virus-infected cells. Cells are infected with SARS-CoV-2 or other viruses and treated with the compound at various concentrations. Viral replication is measured by plaque assay, qPCR, or viral protein expression. Cytotoxicity is assessed to determine the therapeutic index.
Animal Protocol
Animal/Disease Models: Sprague Dawley rats[1]
Doses: 5 and 25 mg/kg
Route of Administration: Oral administration (25 mg/kg) and intravenous (iv) injection (5 mg/kg)
Experimental Results: 1.19 parameters iv (5 mg/kg) po (25 mg/kg) AUClast (μM·h) 5.6 22.8 T1/2 (h) 1.5 1.2 Tmax (h) 0.5 Cmax (μM) 8.7 8.2 F % 81.5 Animal/Disease Models: hACE2 knock- in and Ad5-hACE2 mice[1]
Doses: 250 and 500 mg/kg
Route of Administration: Oral administration; daily, for 4 days
Experimental Results: Inhibited gRNA and sgRNA, which is Biomarkers of coronavirus replication. decreased the viral load and pathological damage of the lung.
Animal/Disease Models: K18-hACE2 mice[1]
Doses: 100 and 250 mg/kg
Route of Administration: Oral administration; daily, for 10 days
Experimental Results: decreased viral RNA and increased the survival rate of mice. decreased evidence of lung pathology and the production of inflammatory cytokines and chemokines in the lung tissues.
Animal/Disease Models: K18-hACE2 mice[1]
Doses: 10, 30, 80 and 150 mg/kg
Route of Administration: Oral administration; daily, for 3 days
Experimental Results: decreased viral load in a d
In vivo animal experiments with Obeldesivir are conducted in mouse models of SARS-CoV-2 infection. The compound is administered orally, and viral load in tissues is measured. Efficacy is assessed by reduction in viral replication and improvement in survival and clinical parameters.
ADME/Pharmacokinetics
Pharmacokinetic properties of Obeldesivir include oral bioavailability as a prodrug of GS-441524. The compound is designed for oral administration with improved pharmacokinetic properties compared to the parent nucleoside. Specific PK parameters such as half-life, Cmax, and AUC have been reported in preclinical studies.
Toxicity/Toxicokinetics
Safety and toxicology data for Obeldesivir are being evaluated in preclinical and clinical studies. As a nucleoside analog, potential toxicities include effects on host cell DNA and RNA synthesis. The compound is for research use and is not approved for clinical use without appropriate regulatory approval.
References

[1]. The adenosine analog prodrug ATV006 is orally bioavailable and has preclinical efficacy against parental SARS-CoV-2 and variants. Sci Transl Med. 2022 May 17:eabm7621.

Additional Infomation
Obeldesivir has CAS number 2647441-36-7, molecular formula C16H19N5O5, and molecular weight 361.35【35†30】. Synonyms: GS-5245, ATV-006【35†23】. It is an oral prodrug of GS-441524 targeting viral RNA polymerase【35†5-L6】. It inhibits SARS-CoV-2 replication【35†24】. It is an investigational antiviral drug【35†35-L37】. Not for clinical use without approval; for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H19N5O5
Molecular Weight
361.35
Exact Mass
361.138
CAS #
2647441-36-7
PubChem CID
162513664
Appearance
White to off-white solid powder
LogP
-0.3
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
5
Heavy Atom Count
26
Complexity
595
Defined Atom Stereocenter Count
4
SMILES
C([C@]1(C2=CC=C3C(=NC=NN23)N)[C@@H]([C@H](O)[C@@H](COC(=O)C(C)C)O1)O)#N
InChi Key
YIHPGVCWGSURHO-VSBTWAGUSA-N
InChi Code
InChI=1S/C16H19N5O5/c1-8(2)15(24)25-5-10-12(22)13(23)16(6-17,26-10)11-4-3-9-14(18)19-7-20-21(9)11/h3-4,7-8,10,12-13,22-23H,5H2,1-2H3,(H2,18,19,20)/t10-,12-,13-,16+/m1/s1
Chemical Name
[(2R,3S,4R,5R)-5-(4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-dihydroxyoxolan-2-yl]methyl 2-methylpropanoate
Synonyms
Obeldesivir GS-5245 ATV-006 SHEN-26GS5245 ATV006 SHEN26
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~691.85 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7674 mL 13.8370 mL 27.6740 mL
5 mM 0.5535 mL 2.7674 mL 5.5348 mL
10 mM 0.2767 mL 1.3837 mL 2.7674 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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