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ANTS

Cat No.:V45932 Purity: ≥98%
ANTS is a fluorescent dye reagent.
ANTS
ANTS Chemical Structure CAS No.: 5398-34-5
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
250mg
500mg
Other Sizes
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Product Description
ANTS is a fluorescent dye reagent. Adding ANTS and DPX to liposomes can serve as an effective method to detect membrane leakage.
ANTS (CAS 5398-34-5), also known as 8-Aminonaphthalene-1,3,6-trisulfonic acid, is a highly versatile, water-soluble, polyanionic fluorescent dye. Its molecular formula is C10H7NNa2O9S3. ANTS is characterized by an excitation wavelength of 380 nm and an emission wavelength of 520 nm. The dye is used for assessing membrane integrity, particularly in studies involving liposomal formulations, where it effectively measures membrane leakage when encapsulated alongside a cationic quencher such as DPX. It is also a fluorescent label for saccharides and glycoproteins, used for oligosaccharide sequencing.
Biological Activity I Assay Protocols (From Reference)
Targets
ANTS does not have a specific biological target as a drug. Its primary application is as a fluorescent probe for studying membrane permeability, liposome lysis, and membrane fusion. As a polyanionic dye, it is often coupled with the cationic quencher DPX for membrane fusion or permeability assays. The mechanism of action is based on fluorescence quenching: ANTS fluorescence is quenched by DPX at high concentrations. When membrane leakage occurs, the contents of liposomes (ANTS and DPX) are diluted, leading to an increase in ANTS fluorescence. This dequenching allows for quantitative measurement of membrane integrity.
ln Vitro
In vitro, ANTS is used as a fluorescent dye for studying membrane permeability and liposome lysis. Encapsulation of ANTS and DPX in liposomes provides an effective approach for measuring membrane leakage. The dye is also utilized as a fluorescent label for saccharides and glycoproteins, and is used for oligosaccharide sequencing. Its fluorescence has been shown to be effectively quenched by Thallium and Cesium ions. ANTS is also utilized as a neuronal tracer, and its relatively high Stokes shift in water sufficiently separates its emission from the autofluorescence of biological samples.
ln Vivo
In vivo activity of ANTS is not typically studied, as it is a fluorescent probe rather than a bioactive drug. However, it has been used to determine water permeability in red blood cell ghosts and kidney collecting tubules. In these applications, ANTS is used as a tracer to measure water flux across membranes. Its fluorescence properties allow for real-time monitoring of changes in volume or concentration within cellular or vesicular compartments.
Enzyme Assay
D2O increased the fluorescence quantum yield of ANTS four-fold, a property demonstrated to be useful in the determination of water permeability in biological membranes. The reducing end of carbohydrates reacts with the primary amino group of the ANTS molecule, forming a Schiff base, which can then be reduced by sodium cyanoborohydride to a secondary amine. This reductive amination reaction is acid-catalyzed, and the pH of the reaction can alter the kinetics and degree of derivatization of the carbohydrate by ANTS. Labeling of carbohydrates with ANTS allows for complex mixtures to be separated via capillary electrophoresis.
Cell Assay
In vitro cell-based assays using ANTS typically involve measuring membrane integrity or permeability. A standard protocol: liposomes are prepared encapsulating a high concentration of ANTS and a quencher such as DPX. These ANTS/DPX-loaded liposomes are then added to cells or to a solution containing a membrane-disrupting agent. The fluorescence of ANTS is monitored over time using a fluorometer with excitation at 355 nm and emission at 512 nm. An increase in fluorescence indicates leakage of the liposome contents, which can be used to assess the membrane-damaging activity of a compound or to study the mechanisms of membrane fusion and lysis.
Animal Protocol
In vivo animal experiments using ANTS are limited. For studies of membrane permeability in vivo, ANTS can be encapsulated in liposomes or other carriers and administered to animals. A standard protocol for assessing intestinal permeability: ANTS-loaded liposomes are administered orally to mice. At various time points, blood samples are collected, and the fluorescence of ANTS in the plasma is measured. An increase in plasma ANTS fluorescence indicates that the liposomes have been disrupted and the dye has been absorbed, providing a measure of intestinal membrane integrity. Such assays are used to study the effects of drugs or disease states on gut barrier function.
ADME/Pharmacokinetics
Pharmacokinetic properties of ANTS are not a primary focus of study, as it is a research tool. The compound is water-soluble and highly negatively charged, which limits its ability to cross biological membranes. This property is exploited in membrane permeability assays, as ANTS is retained within liposomes or cells unless membrane integrity is compromised. The compound is stable in aqueous solutions and its fluorescence is pH-dependent, with stability at pH 4-10. It is typically stored as a powder at room temperature.
Toxicity/Toxicokinetics
Toxicity data for ANTS is limited. As a fluorescent dye, it is generally considered to have low toxicity at the concentrations used for assays (typically in the micromolar to millimolar range). The compound is a polyanionic dye and is not expected to be readily absorbed through biological membranes, which limits its systemic toxicity. However, standard laboratory safety precautions should be followed when handling the compound. It should be stored appropriately and disposed of according to local regulations.
References

[1]. A Fluorescence Dequenching-based Liposome Leakage Assay to Measure Membrane Permeabilization by Pore-forming Proteins. Bio Protoc. 2021 May 20;11(10):e4025.

Additional Infomation
ANTS is a fluorescent dye reagent used for the detection of membrane leakage and for labeling saccharides. Incorporation of ANTS and DPX into liposomes is an effective method for detecting membrane leakage. The dye has a relatively high Stokes shift in water, separating its emission from biological autofluorescence. Its primary amine group allows for reductive amination with carbohydrates. ANTS is not a drug and has no clinical use or approval status. It is commercially available from chemical suppliers for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C10H7NO9S3-2.2[NA+].H2O
Molecular Weight
445.35376
Exact Mass
426.908
CAS #
5398-34-5
Related CAS #
79873-38-4 (unspecified hydrochloride salt);901-79-1 (tri-hydrochloride salt)
PubChem CID
64951
Appearance
White to off-white solid powder
Density
1.974g/cm3
Melting Point
138 °C (dec.)(lit.)
LogP
3.3
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
3
Heavy Atom Count
23
Complexity
756
Defined Atom Stereocenter Count
0
InChi Key
UBDHSURDYAETAL-UHFFFAOYSA-N
InChi Code
InChI=1S/C10H9NO9S3/c11-8-3-6(21(12,13)14)1-5-2-7(22(15,16)17)4-9(10(5)8)23(18,19)20/h1-4H,11H2,(H,12,13,14)(H,15,16,17)(H,18,19,20)
Chemical Name
8-aminonaphthalene-1,3,6-trisulfonic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~20 mg/mL (~46.80 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2454 mL 11.2271 mL 22.4542 mL
5 mM 0.4491 mL 2.2454 mL 4.4908 mL
10 mM 0.2245 mL 1.1227 mL 2.2454 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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