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Amino-PEG6-acid

Cat No.:V11117 Purity: ≥98%
NH2-PEG6-CH2CH2COOH is a cleavable 6-unit PEG ADC linker, used for the synthesis of Antibody-drug conjugates (ADC).
Amino-PEG6-acid
Amino-PEG6-acid Chemical Structure CAS No.: 905954-28-1
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
500mg
Other Sizes
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Product Description
NH2-PEG6-CH2CH2COOH is a cleavable 6-unit PEG ADC linker, used for the synthesis of Antibody-drug conjugates (ADC). NH2-PEG6-CH2CH2COOH is also a PEG-based PROTAC (PROteolysis TArgeting Chimera) linker that can be used for PROTAC synthesis.
Amino-PEG6-acid (CAS#: 905954-28-1) is a polyethylene glycol (PEG)-based linker containing an amino group and a terminal carboxylic acid. It features a hydrophilic PEG spacer of 6 ethylene glycol units that increases solubility in aqueous media. The amino group is reactive with carboxylic acids, activated NHS esters, and carbonyls, while the terminal carboxylic acid can be activated for amide bond formation. Amino-PEG6-acid belongs to the PEG class of PROTAC linkers and can be used to prepare PROTAC protein degraders.
Biological Activity I Assay Protocols (From Reference)
Targets
As a chemical linker, Amino-PEG6-acid itself does not have a biological target. Its utility lies in its ability to serve as a hydrophilic, flexible spacer in the synthesis of bifunctional molecules such as PROTACs. In PROTAC design, one ligand binds to the target protein and another ligand binds to an E3 ubiquitin ligase; these two ligands are connected by a linker. The hydrophilic PEG spacer enhances the aqueous solubility and flexibility of the resulting PROTAC, which are critical for optimal ternary complex formation and target protein degradation.
ln Vitro
An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC.
As a chemical linker, Amino-PEG6-acid does not exhibit intrinsic biological activity and therefore does not have conventional in vitro activity. Its in vitro utility is demonstrated in the synthesis and evaluation of PROTACs, where it is used to connect a target-binding ligand to an E3 ligase-binding ligand. The efficiency of PROTAC synthesis using this linker is typically assessed by HPLC and mass spectrometry. The linker's role is to ensure optimal spacing and flexibility for ternary complex formation.
ln Vivo
As a chemical linker, Amino-PEG6-acid does not possess intrinsic biological activity and therefore is not evaluated in conventional in vivo efficacy models. Its in vivo relevance is demonstrated through the biological activity of the PROTAC degraders it helps to form. The PEG component of the linker can contribute to improved pharmacokinetic properties of the PROTAC, including enhanced solubility and reduced immunogenicity, which are beneficial for in vivo applications.
Enzyme Assay
In a typical non-cellular conjugation experiment, Amino-PEG6-acid is dissolved in an appropriate solvent such as DMSO or DMF. The carboxylic acid group is activated using a coupling reagent such as HATU, HOBt, or EDC in the presence of a base. The activated ester is then reacted with an amine-containing molecule to form an amide bond. Alternatively, the amino group of the linker can be reacted with a carboxylic acid-containing molecule. The reaction is carried out at room temperature. The product is purified by column chromatography or preparative HPLC and characterized by NMR and mass spectrometry.
Cell Assay
Since Amino-PEG6-acid is a chemical linker rather than a drug substance, standard in vitro cell-based assays are not directly applicable. However, the cellular activity of the PROTAC degraders that incorporate this linker can be assessed in relevant cell lines. A PROTAC containing this linker can be evaluated for its ability to degrade a target protein in cancer cells via Western blot analysis. Cell viability assays such as MTT or CellTiter-Glo can be used to assess the functional consequences of target protein degradation.
Animal Protocol
As a chemical linker, Amino-PEG6-acid is not administered to animals as a therapeutic agent. In vivo studies are conducted with the final PROTAC conjugates that incorporate this linker. These studies typically involve xenograft mouse models for efficacy evaluation, where tumor-bearing mice are treated with the PROTAC, and tumor growth inhibition is measured. Pharmacokinetic studies may also be performed to assess the impact of the PEG linker on circulation half-life and biodistribution.
ADME/Pharmacokinetics
As a chemical linker, Amino-PEG6-acid is not a therapeutic agent and therefore does not have a pharmacokinetic profile of its own. The pharmacokinetic properties of the linker are relevant only in the context of the final PROTAC conjugate. The hydrophilic PEG spacer can contribute to favorable PK properties of the conjugate, such as increased aqueous solubility and reduced aggregation. The overall PK profile is determined by the combined properties of the ligands and the linker.
Toxicity/Toxicokinetics
Amino-PEG6-acid is a research-use chemical and is not intended for human therapeutic use. As a PEG-based linker, it is generally considered to have low inherent toxicity, although appropriate safety precautions should be taken. The potential toxicity of the final PROTAC conjugates incorporating this linker is determined by the specific ligands used.
References

[1]. Engineered polypeptide conjugates and methods for making thereof using transglutaminase. US20130230543A1.

Additional Infomation
Amino-PEG6-acid is a heterobifunctional PEG linker used in PROTAC development and bioconjugation. The compound contains an amino group and a carboxylic acid, enabling orthogonal conjugation strategies. The 6-unit PEG spacer provides flexibility and solubility for the resulting conjugates. The compound is commonly used in research settings for the development of targeted protein degradation therapies and is not an approved drug.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H31NO8
Molecular Weight
353.4085
Exact Mass
353.205
CAS #
905954-28-1
PubChem CID
51035062
Appearance
White to light yellow solid powder
LogP
0.219
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
9
Rotatable Bond Count
20
Heavy Atom Count
24
Complexity
268
Defined Atom Stereocenter Count
0
InChi Key
PVRGRRPCHFTMMD-UHFFFAOYSA-N
InChi Code
InChI=1S/C15H31NO8/c16-2-4-20-6-8-22-10-12-24-14-13-23-11-9-21-7-5-19-3-1-15(17)18/h1-14,16H2,(H,17,18)
Chemical Name
3-[2-[2-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8296 mL 14.1479 mL 28.2957 mL
5 mM 0.5659 mL 2.8296 mL 5.6591 mL
10 mM 0.2830 mL 1.4148 mL 2.8296 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT01910025 Completed Drug: ADI-PEG 20 Non-Hodgkin's Lymphoma Polaris Group 2013-12-06 Phase 2
NCT01910012 Completed Drug: ADI-PEG 20 Acute Myeloid Leukemia Polaris Group 2015-01-06 Phase 2
NCT01665183 Completed Drug: ADI-PEG 20 Cutaneous Melanoma, Uveal Melanoma, Ovarian
Carcinoma or Other Advanced Solid Tumors
Polaris Group 2012-09 Phase 1
NCT00450372 Completed Biological: ADI-PEG-20
Other: Pharmacology Studies
Melanoma (Skin) University of Miami 2004-06 Phase 2
NCT02006030 Completed Drug: ADI-PEG 20
Drug: Transarterial chemoembolization
Unresectable Hepatocellular Carcinoma Polaris Group 2014-10-15 Phase 2
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