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AMCA-X SE

Cat No.:V46021 Purity: ≥98%
AMCA-X-SE is a coumarin analogue that produces fixed blue fluorescence.
AMCA-X SE
AMCA-X SE Chemical Structure CAS No.: 216309-02-3
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
AMCA-X-SE is a coumarin analogue that produces fixed blue fluorescence. NHS-activated ester can form stable amide bonds with primary amine groups and is used to label the amino groups of peptides, proteins, and oligonucleotides. group of reactive dyes. excitation and emmission maximum (wavelength): 354/442 nm.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
The optimal way to prepare stock solution 1. Protein preparation: To get the desired labeling effect, add 2 mg/mL of protein (antibody). The ideal pH for the protein solution is 8.5±0.5. Utilize 1 M protein if the pH is less than 8.0. 2) A protein concentration below 2 mg/mL will result in significantly poorer labeling efficiency. It is advised to use a final protein concentration range of 2–10 mg/mL to get the highest labeling efficiency. 3) There must be obvious 2 protein. To prepare the dye, make a 10 mM stock solution in the AMCA-X-SE vial by adding anhydrous dimethylimine, 3. For the dye coating preparation procedure, the ideal molar ratio of AMCA-X-SE to cosmetics is approximately 10, depending on the quantity of cosmetics to be branded. For instance: Dissolve a tube containing 1 mg AMCA-X-SE in 100 μL of DMSO if the needed labeled protein is 500 μL of 2 mg/mL IgG (MW=150,000). The AMCA-X-SE requires 3 μL of material. The exact calculation procedure is as follows: 1) mmol (IgG) = mg/mL (IgG)×mL (IgG) / MW (IgG) = 2 mg/mL×0.5 mL / 150,000 mg/mmol = 6.7×10 -6 mmol 2) mmol (AMCA-X-SE) = millimole (IgG)×10 = 6.7×10-6 mmol×10 = 6.7×10-5 mmol3) μL (AMCA-X-SE) = Millimole (AMCA-X-SE)×MW (AMCA-X-SE) / mg/μL (AMCA-X-SE) = 6.7×10-5 mmol×443 mg/mmol / 0.01 mg/μL = 3 μL ( AMCA-X-SE) Instructions for use 1. Labeling Reaction 1: Gradually add the calculated volume of freshly fixed 10 mg/mL AMCA-X-SE to the protein sample solution in 0.5 mL increments, gently shake to combine, and then quickly centrifuge to gather the sample at the tube's bottom. 2) Don't mix the dyeing process. Establish a dark environment for the reaction tube. Shake the reagent gently for 60 minutes at the initial conditions. Gently rotate the reaction tube many times every ten to fifteen minutes to reach the full 2. Protein-sealing desalting coupling: The conjugation process that follows uses an example of blocking dye conjugates using a Sephadex G-25 column. 1) Prepare the Sephadex G-25 column as directed by the manufacturer. 2) Fill the top of the Sephadex G-25 column with the reaction mixture. 3) Add PBS (pH 7.2–7.4) as soon as the sample dips below the top resin's surface. 4) To finish columnar shrinking, add additional PBS (pH 7.2–7.4) to the necessary sample. Mix the ingredients that contain the chosen protein-dye combination. Notes 1. Light and humidity can affect AMCA-X-SE. Make the AMCA-X-SE solution right away, then throw away any leftover 2. While 20–50% glycerol will decrease labeling efficiency, low amounts of folded sodium (≤3 mM or 0.02%) or thimerosal (≤0.02 mM or 0.01%) do not appreciably interfere with protein labeling. 3. Utilize buffers that include ammonium ions or primary amines (such Tris or glycine), as these substances compete with the protein that needs to be tagged. 4. This product is not intended for use in clinical diagnosis or treatment; rather, it is solely for professional use in scientific study. 5. Please wear a lab coat and disposable gloves during the operation for your own health and safety.
References

[1]. Surface modification of the polyethyleneimine layer on silicone oxide film via UV radiation. Applied surface science, 2009, 255(12): 6103-6106.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H25N3O7
Molecular Weight
443.4498
Exact Mass
429.19
CAS #
216309-02-3
PubChem CID
59866294
Appearance
White to off-white solid powder
LogP
3.342
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
10
Heavy Atom Count
32
Complexity
806
Defined Atom Stereocenter Count
0
InChi Key
QYSJBOMZRLAPJR-UHFFFAOYSA-N
InChi Code
InChI=1S/C22H25N3O7/c1-13-15-7-6-14(23)11-17(15)31-22(30)16(13)12-18(26)24-10-4-2-3-5-21(29)32-25-19(27)8-9-20(25)28/h6-7,11H,2-5,8-10,12,23H2,1H3,(H,24,26)
Chemical Name
(2,5-dioxopyrrolidin-1-yl) 6-[[2-(7-amino-4-methyl-2-oxochromen-3-yl)acetyl]amino]hexanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2550 mL 11.2752 mL 22.5505 mL
5 mM 0.4510 mL 2.2550 mL 4.5101 mL
10 mM 0.2255 mL 1.1275 mL 2.2550 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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