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Alizarine Yellow R

Cat No.:V10789 Purity: ≥98%
Alizarine Yellow R (Mordant orange 1) is a salicylic acid analogue and an azo dye.
Alizarine Yellow R
Alizarine Yellow R Chemical Structure CAS No.: 2243-76-7
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
250mg
500mg
1g
Other Sizes
Official Supplier of:
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Product Description
Alizarine Yellow R (Mordant orange 1) is a salicylic acid analogue and an azo dye. Alizarine Yellow R is mainly used as a pH indicator and as a biological stain in the chemical inspection and dyeing industries.
Alizarine Yellow R (CAS 2243-76-7) is an organic compound belonging to the class of azo dyes. It is a yellow to orange-red powder used as a pH indicator and a dye in textile and biological staining applications. Alizarine Yellow R has a molecular formula of C13H9N3O5 and a molecular weight of 287.23.
Biological Activity I Assay Protocols (From Reference)
Targets
Alizarine Yellow R does not have a defined biological target as it is a dye rather than a drug. It is used as a pH indicator and as a dye for staining biological specimens. Its mechanism of action is physical, based on its color change properties in response to pH.
ln Vitro
Alizarine Yellow R is not a bioactive compound with defined pharmacological activity. Its in vitro activity is related to its use as a pH indicator and a dye. The compound changes color from yellow to red in response to pH changes, making it useful for pH determination and biological staining.
ln Vivo
Alizarine Yellow R is not used as a therapeutic agent and does not have defined in vivo pharmacological activity. Its applications are limited to laboratory and industrial settings as a pH indicator and dye. The compound is not intended for in vivo use as a drug.
Enzyme Assay
In vitro assays for Alizarine Yellow R typically involve measuring its color change properties in response to pH. The compound is dissolved in appropriate buffers at various pH values, and UV-Vis spectra are recorded. The pH-dependent color change and absorption maxima are characterized.
Cell Assay
Cell-based assays are not applicable for Alizarine Yellow R as it is not a bioactive compound. The compound is used as a dye for staining biological specimens in histology and microscopy. It is not intended for use in cellular assays or as a therapeutic agent.
Animal Protocol
In vivo animal studies are not applicable for Alizarine Yellow R as it is not a therapeutic agent. The compound is used in laboratory and industrial applications as a pH indicator and dye. It is not administered to animals for pharmacological evaluation.
ADME/Pharmacokinetics
Alizarine Yellow R has a molecular weight of 287.23 and a molecular formula of C13H9N3O5. It appears as a yellow to orange-red powder. The compound is soluble in water and organic solvents. It is used as a pH indicator with a transition range of pH 10.0-12.0 (yellow to red).
Toxicity/Toxicokinetics
Alizarine Yellow R is generally considered safe for handling in laboratory settings when appropriate precautions are taken. The compound may cause irritation upon contact with skin or eyes. It is not intended for human therapeutic use and is available only for research and industrial purposes. Standard laboratory safety precautions should be followed when handling the compound.
References

[1]. Independent hydrothermal synthesis of the undoped, nitrogen, boron and sulphur doped biogenic carbon nanodots and their potential application in the catalytic chemo-reduction of Alizarine yellow R azo dye. Spectrochim Acta A Mol Biomol Spectrosc. 2021 Nov 5;260:119920.

Additional Infomation
Alizarine Yellow R is an azo dye used as a pH indicator and as a dye for textile and biological staining applications. It changes color from yellow to red in response to pH changes, with a transition range of pH 10.0-12.0. The compound is not a therapeutic agent and is intended for research and industrial use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H9N3O5
Molecular Weight
287.2277
Exact Mass
287.054
CAS #
2243-76-7
PubChem CID
15588
Appearance
Brown to dark brown solid powder
Density
1.5±0.1 g/cm3
Boiling Point
571.4±50.0 °C at 760 mmHg
Melting Point
250°C
Flash Point
299.4±30.1 °C
Vapour Pressure
0.0±1.7 mmHg at 25°C
Index of Refraction
1.672
LogP
4.26
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
3
Heavy Atom Count
21
Complexity
415
Defined Atom Stereocenter Count
0
InChi Key
YVJPMMYYRNHJAU-UHFFFAOYSA-N
InChi Code
InChI=1S/C13H9N3O5/c17-12-6-3-9(7-11(12)13(18)19)15-14-8-1-4-10(5-2-8)16(20)21/h1-7,17H,(H,18,19)
Chemical Name
2-hydroxy-5-[(4-nitrophenyl)diazenyl]benzoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~87.04 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4815 mL 17.4077 mL 34.8153 mL
5 mM 0.6963 mL 3.4815 mL 6.9631 mL
10 mM 0.3482 mL 1.7408 mL 3.4815 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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