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Urease-IN-6

Cat No.:V53877 Purity: ≥98%
Urease-IN-6 is a potent Urease inhibitor (antagonist) with IC50 of 14.2 μM.
Urease-IN-6
Urease-IN-6 Chemical Structure CAS No.: 362502-79-2
Product category: Bacterial
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
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Product Description
Urease-IN-6 is a potent Urease inhibitor (antagonist) with IC50 of 14.2 μM. Urease-IN-6 may be utilized in the study of peptic and gastric ulcers.
Urease-IN-6 is a potent, small-molecule inhibitor of urease, a nickel-dependent enzyme that catalyzes the hydrolysis of urea to ammonia and carbon dioxide. It exhibits an IC50 value of 14.2 microM. It is a thiourea-based compound used in preclinical research into peptic and gastric ulcers, bacterial infections, and other conditions associated with excessive ammonia production.
Biological Activity I Assay Protocols (From Reference)
Targets
Urease (a nickel-dependent metalloenzyme). Urease-IN-6 is a thiourea-based inhibitor that selectively blocks the nickel-containing active site of urease, preventing the hydrolysis of urea to ammonia and carbon dioxide. By inhibiting urease, it reduces ammonia production, which is a key pathogenic factor in peptic and gastric ulcers (associated with H. pylori infection), urinary tract infections, and other gastrointestinal and infectious diseases. Urease-IN-6 is a potent urease inhibitor, exhibiting an IC50 value of 14.2 microM.
ln Vitro
Urease-IN-6 is a potent inhibitor of urease (IC50 = 14.2 microM). In vitro, it blocks the activity of urease from various sources, including bacterial urease (e.g., from Helicobacter pylori, Proteus mirabilis). It inhibits ammonia production from urea hydrolysis in a dose-dependent manner. The thiourea-based compound selectively blocks the nickel-dependent active site of urease. It is a potent Urease inhibitor, with IC50 of 14.2 microM. It can be used in the study of peptic and gastric ulcers.
ln Vivo
Urease-IN-6 is used in preclinical research for peptic and gastric ulcers. By inhibiting urease, it reduces the production of ammonia, which neutralizes gastric acid and promotes H. pylori colonization. In animal models of H. pylori infection or gastric ulcer, urease inhibitors are expected to reduce bacterial burden, decrease ammonia levels, and promote ulcer healing. It is used in the study of peptic and gastric ulcers.
Enzyme Assay
For a cell-free urease inhibition assay, urease enzyme (e.g., from jack bean or recombinant bacterial urease) is used. A typical protocol is as follows. Urease (1-5 U/mL) is incubated with various concentrations of Urease-IN-6 (0.01-1000 uM) in 100 uL of assay buffer (100 mM phosphate buffer, pH 7.5, containing 10 mM urea and 0.1 mM EDTA) at 37degC for 15-30 minutes. The reaction is initiated by adding urea substrate (10-50 mM). After 15-60 minutes at 37degC, the reaction is stopped by adding 500 uL of phenol-nitroprusside solution and 500 uL of alkaline hypochlorite solution (Berthelot reaction). The mixture is incubated at room temperature for 20 minutes, and the absorbance at 630 nm (or 540-700 nm) is measured spectrophotometrically. The amount of ammonia released is quantified. The IC50 is determined by plotting percentage inhibition against inhibitor concentration and fitting to a sigmoidal dose-response curve. For kinetic analysis (Lineweaver-Burk plot), various concentrations of urea (2.5-40 mM) are used. Urease-IN-6 is a thiourea-based compound that selectively blocks the nickel-dependent active site of urease, with IC50 = 14.2 microM.
Cell Assay
For in vitro cellular or antibacterial assays, H. pylori (or other urease-producing bacteria) are cultured on appropriate media (e.g., blood agar or selective agar for H. pylori). A rapid urease test (RUT) is performed: a bacterial suspension (10⁸ CFU/mL) is mixed with urease test reagent containing urea and a pH indicator (phenol red). Urease-IN-6 (0.1-1000 uM) is added, and the color change from yellow to pink (due to ammonia production and pH increase) is monitored over time. The time to color change is recorded. Alternatively, bacteria are inoculated into urease broth containing Urease-IN-6 at various concentrations, and ammonia production is quantified by the Berthelot reaction. For MIC determination, standard broth microdilution methods can be used; however, urease inhibitors are typically not bactericidal but function as anti-virulence agents by blocking the enzyme that facilitates colonization. Urease-IN-6 can be used in study peptic and gastric ulcers.
Animal Protocol
No specific in vivo animal study protocols are documented. A typical protocol for evaluating a urease inhibitor in a gastric ulcer model would be as follows. Male Sprague-Dawley rats (200-250 g) are fasted overnight, and gastric ulcers are induced by oral administration of 60% ethanol (1 mL/rat) or by pylorus ligation (Shay model). Alternatively, H. pylori infection can be established by oral inoculation of H. pylori (10⁸-10⁹ CFU) in mice or gerbils. Urease-IN-6 is administered orally (10-100 mg/kg) 1-2 hours before ulcer induction or daily for 5-7 days in infection models. Control groups receive vehicle (e.g., 0.5% methylcellulose) or positive control (e.g., omeprazole, bismuth salts, or standard H. pylori triple therapy). At the end of the treatment period, animals are euthanized. Stomachs are excised, opened along the greater curvature, and washed with saline. The ulcer index (length and number of lesions) is measured macroscopically. For infection models, gastric tissue is homogenized, and H. pylori is cultured on selective media to determine bacterial load. Urease activity in gastric tissue homogenates is measured by the Berthelot method. Urease-IN-6 may be utilized in the study of peptic and gastric ulcers.
ADME/Pharmacokinetics
No pharmacokinetic data has been reported. Urease-IN-6 is a small molecule with a molecular weight of 325.43 g/mol. It is soluble in DMSO (100 mg/mL). As a thiourea-based compound, it may have moderate oral bioavailability and tissue distribution. The compound is likely to be metabolized in the liver. Specific ADME properties require experimental determination.
Toxicity/Toxicokinetics
No specific toxicity data has been reported. Thiourea derivatives can be toxic at high doses, but Urease-IN-6 has not undergone formal toxicity testing. In vitro, it shows no significant cytotoxicity at concentrations up to 100 uM in most cell lines. The compound is for research use only. Standard chemical safety precautions should be used when handling. It may be an irritant. Not for human use.
References
[1]. Kanwal, et al. Syntheses, in vitro urease inhibitory activities of urea and thiourea derivatives of tryptamine, their molecular docking and cytotoxic studies. Bioorg Chem. 2019 Mar;83:595-610.
Additional Infomation
Urease-IN-6 is also known as 1-[2-(1H-indol-3-yl)ethyl]-3-(4-methoxyphenyl)thiourea. The molecular formula is C18H19N3OS, and the molecular weight is 325.43. The IUPAC name is 1-[2-(1H-indol-3-yl)ethyl]-3-(4-methoxyphenyl)thiourea. It is a thiourea-based urease inhibitor with an IC50 of 14.2 microM. It is used as a research tool for studying urease in the context of H. pylori infections, peptic ulcers, gastric ulcers, and other ammonia-related diseases (e.g., hepatic encephalopathy). It is not approved for clinical use. It is stored as a powder at -20degC, protected from light and moisture. Purity: ≥98%.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H19N3OS
Molecular Weight
325.428
Exact Mass
325.124
CAS #
362502-79-2
PubChem CID
713457
Appearance
Typically exists as solid at room temperature
LogP
3.8
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
5
Heavy Atom Count
23
Complexity
385
Defined Atom Stereocenter Count
0
SMILES
COC1=CC=C(C=C1)NC(=S)NCCC2=CNC3=CC=CC=C32
InChi Key
USHGHTOQCIQMRQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H19N3OS/c1-22-15-8-6-14(7-9-15)21-18(23)19-11-10-13-12-20-17-5-3-2-4-16(13)17/h2-9,12,20H,10-11H2,1H3,(H2,19,21,23)
Chemical Name
1-[2-(1H-indol-3-yl)ethyl]-3-(4-methoxyphenyl)thiourea
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0729 mL 15.3643 mL 30.7286 mL
5 mM 0.6146 mL 3.0729 mL 6.1457 mL
10 mM 0.3073 mL 1.5364 mL 3.0729 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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