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OF-1

Alias: OF-1; OF1; OF 1.
Cat No.:V56619 Purity: ≥98%
OF-1 is a chemical probe of the BRPF bromodomain.
OF-1
OF-1 Chemical Structure CAS No.: 19973-83-4
Product category: Others 11
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
OF-1 is a chemical probe of the BRPF bromodomain. OF-1 has been shown to bind to BRPF1B with a KD of 100 nM (ITC); to BRPF2 with a KD of 500 nM (ITC); and to BRPF3 with a KD of 2.4 uM (ITC). The selectivity for other bromodomains is very good, generally >100-fold. The closest off-target effects were against BRD4 (39-fold selectivity) and TIF1a (50% inhibition at 20 µM in alphascreen). OF-1 improved thermal stability in the cellular thermal shift assay (CETSA) of full-length BRPF1B at a concentration of 1 µM and also showed accelerated FRAP recovery in a BRPF2 FRAP assay at a concentration of 5 µM. It shows moderate general cytotoxic effect. (http://www.thesgc.org/chemical-probes/OF-1).
OF-1 is a potent and selective BRPF (Bromodomain and PHD Finger containing) bromodomain inhibitor. It is a chemical probe for studying BRPF bromodomains and their role in chromatin-mediated gene regulation. OF-1 is used to explore epigenetic mechanisms and validate BRPF proteins as therapeutic targets.
Biological Activity I Assay Protocols (From Reference)
Targets
OF-1 specifically targets BRPF1B, BRPF2, and BRPF3 bromodomains. It binds to BRPF1B with a Kd of 100 nM (ITC), to BRPF2 with a Kd of 500 nM (ITC), and to BRPF3 with a Kd of 2.4 μM (ITC). It exhibits 39-fold selectivity for BRPF1B and BRPF2 over BRD4.
ln Vitro
In vitro, OF-1 demonstrates potent binding to BRPF bromodomains, particularly BRPF1B (Kd = 100 nM) and BRPF2 (Kd = 500 nM). It shows excellent selectivity over other bromodomains including BRD4 (39-fold selectivity). At 20 μM, OF-1 shows 50% inhibition of TIF1α, indicating some off-target activity at high concentrations.
ln Vivo
Cellular and in vivo activity of OF-1 has been characterized primarily through its use as a chemical probe. By inhibiting BRPF bromodomains, OF-1 disrupts the function of proteins that recognize and bind specific epigenetic marks, affecting the interpretation of epigenetic signals and chromatin-mediated gene regulation. It is utilized to explore the role of BRPF1 bromodomains in gene regulation.
Enzyme Assay
The binding of OF-1 to BRPF bromodomains is typically measured using isothermal titration calorimetry (ITC). Recombinant BRPF bromodomain proteins are titrated with the compound, and the heat change upon binding is measured. Kd values are calculated from the binding isotherms. Fluorescence polarization (FP) or AlphaScreen assays can also be used for higher-throughput screening.
Cell Assay
Cellular assays for OF-1 involve treating cells with the compound and assessing the effects on BRPF-dependent gene expression. Chromatin immunoprecipitation (ChIP) assays are used to evaluate the occupancy of BRPF proteins at target gene promoters. qRT-PCR is used to measure changes in the expression of BRPF-regulated genes. Cell viability and proliferation assays assess the functional consequences of BRPF inhibition.
Animal Protocol
In vivo studies of OF-1 are typically conducted in animal models to investigate the role of BRPF bromodomains in disease. The compound is administered via intraperitoneal (i.p.) injection or oral gavage. Tissues are collected for analysis of BRPF target gene expression by qRT-PCR and histone modification status by Western blotting or ChIP. Pharmacodynamic markers are assessed to confirm target engagement.
ADME/Pharmacokinetics
Pharmacokinetic properties of OF-1 are evaluated in rodents following administration. The compound is soluble in warmed DMSO but insoluble in water and ethanol. Formulation in appropriate vehicles (e.g., PEG-based solutions or cyclodextrin-containing formulations) is required for in vivo administration. Plasma concentrations are measured using LC-MS/MS.
Toxicity/Toxicokinetics
OF-1 is intended for research use only and is not approved for clinical use. Standard toxicology assessments would include acute and repeat-dose toxicity studies in rodents. The compound's selectivity profile suggests a favorable off-target safety margin, though specific toxicity data is not available in the public domain.
References

[1]. Selective Targeting of Bromodomains of the Bromodomain-PHD Fingers Family Impairs Osteoclast Differentiation. ACS Chem Biol. 2017 Oct 20;12(10):2619-2630.

[2]. Discovery of a Chemical Tool Inhibitor Targeting the Bromodomains of TRIM24 and BRPF. J Med Chem. 2016 Feb 25;59(4):1642-7.

Additional Infomation
OF-1 is a chemical probe for studying BRPF bromodomains in epigenetic research. BRPF1, BRPF2, and BRPF3 are scaffolding proteins that form complexes with histone acetyltransferases (HATs) such as MOZ and MORF, and play important roles in chromatin remodeling and gene regulation. OF-1 provides a valuable tool for dissecting the biological functions of BRPF bromodomains and evaluating them as therapeutic targets for cancer and other diseases.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
439.02
Elemental Analysis
C, 46.37; H, 4.12; Br, 18.15; N, 9.54; O, 14.53; S, 7.28
CAS #
19973-83-4
Appearance
White to off-white solid powder
InChi Key
YUNQZQREIHWDQT-UHFFFAOYSA-N
InChi Code
InChI=1S/C17H18BrN3O4S/c1-10-7-11(18)5-6-16(10)26(23,24)19-12-8-13-14(9-15(12)25-4)21(3)17(22)20(13)2/h5-9,19H,1-4H3
Chemical Name
4-bromo-N-(2,3-dihydro-6-methoxy-1,3-dimethyl-2-oxo-1H-benzimidazol-5-yl)-2-methyl-benzenesulfonamide
Synonyms
OF-1; OF1; OF 1.
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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