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Mal-PEG2-Val-Cit-PABA-PNP

Mal-PEG2-Val-Cit-PABA-PNP is a cleavable ADC (Antibody-drug conjugate) linker containing 2 PEG (polyethylene glycol) units, which may be utilized to prepare active ADC molecules.
Mal-PEG2-Val-Cit-PABA-PNP
Mal-PEG2-Val-Cit-PABA-PNP Chemical Structure CAS No.: 1345681-52-8
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
500mg
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Product Description
Mal-PEG2-Val-Cit-PABA-PNP is a cleavable ADC (Antibody-drug conjugate) linker containing 2 PEG (polyethylene glycol) units, which may be utilized to prepare active ADC molecules.
Mal-PEG2-Val-Cit-PABA-PNP (CAS#: 1345681-52-8) is a heterobifunctional, cleavable linker used in the synthesis of antibody‑drug conjugates (ADCs). It contains a maleimide group for thiol‑specific conjugation to antibodies, a PEG2 spacer, a Val‑Cit dipeptide cleavable by cathepsin B, a self‑immolative PABA group, and a PNP carbonate ester for payload attachment.
Biological Activity I Assay Protocols (From Reference)
Targets
Protease Cleavable Linker Cleavable Linker
Mal‑PEG2‑Val‑Cit‑PABA‑PNP has no direct biological target. As an ADC linker, it serves to connect an antibody (via maleimide‑thiol conjugation) and a cytotoxic payload (via PNP carbonate ester). After ADC internalization into target cancer cells, the Val‑Cit peptide sequence is recognized and cleaved by lysosomal cathepsin B, followed by self‑elimination of the PABA spacer to release the active payload.
ln Vitro
ADC cytotoxins are connected to antibodies through an ADC connector to form ADCs [1].
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP is a synthetic building block with no direct biological activity. Its function is evaluated as part of a complete ADC in cell‑based assays. Cell viability assays with antigen‑positive cancer cells incubated with ADCs incorporating this linker demonstrate target‑dependent killing, providing indirect evidence of linker functionality.
ln Vivo
A standalone “in vivo activity” for Mal‑PEG2‑Val‑Cit‑PABA‑PNP is not applicable. ADCs constructed with this linker are evaluated in mouse xenograft tumor models, where they show tumor‑specific efficacy (tumor regression) with reduced systemic toxicity compared to non‑cleavable linker ADCs. However, the linker itself is not administered in vivo.
Enzyme Assay
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP is not used in enzyme/receptor binding assays. However, the Val‑Cit dipeptide sequence can be incorporated into a fluorogenic substrate (e.g., with aminobenzoyl (Abz) and 2,4‑dinitrophenyl (Dnp) groups) to demonstrate cleavage by purified cathepsin B in test tubes, but this is not a standard protocol for this specific linker.
Cell Assay
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP is not tested directly on cells. Complete ADCs synthesized with this linker are evaluated for target‑dependent cytotoxicity. Antigen‑positive cells are treated with the ADC (0.0001-100 nM) for 72-96 h, and cell viability is measured by CellTiter‑Glo. Cathepsin B dependence is verified by co‑incubation with the cathepsin B inhibitor CA‑074, which should block ADC activity if cleavage is required.
Animal Protocol
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP alone is not evaluated in animals. ADCs employing this linker are typically administered intravenously (1-10 mg/kg, once weekly for 2-4 weeks) to mice bearing subcutaneous tumor xenografts. Endpoints include tumor volume inhibition, body weight (safety), and determination of released payload in plasma and tumors by LC‑MS/MS to confirm linker cleavage.
ADME/Pharmacokinetics
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP is a chemical linker not intended for standalone administration. Pharmacokinetic properties (e.g., clearance, half‑life) are determined for the complete ADC. For ADCs, the linker's stability in circulation is critical; Mal‑PEG2‑Val‑Cit‑PABA‑PNP‑based ADCs are designed to be stable in plasma (t½ >7 days) and cleaved efficiently in lysosomes.
Toxicity/Toxicokinetics
Not applicable; Mal‑PEG2‑Val‑Cit‑PABA‑PNP is not a drug substance and is not tested in standalone toxicology studies. Toxicity is evaluated for the final ADC. ADCs with Val‑Cit‑PABA cleavable linkers may exhibit off‑target toxicity due to premature payload release in non‑target tissues, but this linker is designed to minimize such effects.
References
[1]. Beck A, et al. Strategies and challenges for the next generation of antibody-drug conjugates. Nat Rev Drug Discov. 2017 May;16(5):315-337.
Additional Infomation
See other relationships...
Mal‑PEG2‑Val‑Cit‑PABA‑PNP is a research‑grade chemical reagent, not a therapeutic agent. It is widely used in ADC research for preclinical development of targeted cancer therapies. The compound has not been approved for human use and is not a clinical trial drug. Its value lies in enabling site‑specific conjugation and controlled intracellular payload release in next‑generation ADCs.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C34H41N7O13
Exact Mass
755.276
CAS #
1345681-52-8
PubChem CID
142597864
Appearance
White to off-white solid powder
LogP
1.6
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
13
Rotatable Bond Count
22
Heavy Atom Count
54
Complexity
1340
Defined Atom Stereocenter Count
2
SMILES
CC(C)[C@@H](C(=O)N[C@@H](CCCNC(=O)N)C(=O)NC1=CC=C(C=C1)COC(=O)OC2=CC=C(C=C2)[N+](=O)[O-])NC(=O)OCCOCCN3C(=O)C=CC3=O
InChi Key
VZRMIJHOKYFMIG-WNJJXGMVSA-N
InChi Code
InChI=1S/C34H41N7O13/c1-21(2)29(39-33(47)52-19-18-51-17-16-40-27(42)13-14-28(40)43)31(45)38-26(4-3-15-36-32(35)46)30(44)37-23-7-5-22(6-8-23)20-53-34(48)54-25-11-9-24(10-12-25)41(49)50/h5-14,21,26,29H,3-4,15-20H2,1-2H3,(H,37,44)(H,38,45)(H,39,47)(H3,35,36,46)/t26-,29-/m0/s1
Chemical Name
[4-[[(2S)-5-(carbamoylamino)-2-[[(2S)-2-[2-[2-(2,5-dioxopyrrol-1-yl)ethoxy]ethoxycarbonylamino]-3-methylbutanoyl]amino]pentanoyl]amino]phenyl]methyl (4-nitrophenyl) carbonate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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