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MK-3402

Cat No.:V53538 Purity: ≥98%
MK-3402 is a metallo-beta-lactamase inhibitor (refer to Example 303 from the patent).
MK-3402
MK-3402 Chemical Structure CAS No.: 2058151-78-1
Product category: Bacterial
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
MK-3402 is a metallo-beta-lactamase inhibitor (refer to Example 303 from the patent). MK-3402 may be utilized in bacterial research.
MK-3402 (Compound303) is a potent metallo-beta-lactamase (MBL) inhibitor that targets clinically relevant MBLs including IMP-1, NDM-1, and VIM-1. It is a small molecule used in combination with beta-lactam antibiotics to overcome resistance mediated by MBLs, which hydrolyze carbapenems and other beta-lactam antibiotics, rendering them ineffective.
Biological Activity I Assay Protocols (From Reference)
Targets
Metallo-beta-lactamases (MBLs): IMP-1 (IC50 = 0.53 nM), NDM-1 (IC50 = 0.25 nM), VIM-1 (IC50 = 0.169 nM). MK-3402 is a potent inhibitor of these MBLs, which are zinc-dependent enzymes that hydrolyze the beta-lactam ring of carbapenems and other beta-lactam antibiotics. By inhibiting MBLs, MK-3402 restores the activity of beta-lactam antibiotics (e.g., meropenem, imipenem) against MBL-producing Gram-negative bacteria.
ln Vitro
MK-3402 potently inhibits MBL enzymes in biochemical assays. It has IC50 values of 0.53 nM against IMP-1, 0.25 nM against NDM-1, and 0.169 nM against VIM-1. It is a metallo-beta-lactamase inhibitor. It shows synergistic antibacterial activity when combined with beta-lactam antibiotics. The compound inhibits the expression of IMP-1 in Serratia with an IC50 of 0.58 uM, NDM-1 in E. coli with an IC50 of 0.22 uM, and VIM-1 in Klebsiella with an IC50 of 1.95 uM in cell-based assays.
ln Vivo
MK-3402 can be used in bacterial research and shows a synergistic effect when used in combination with beta-lactam antibiotics. In animal models of infection caused by MBL-producing bacteria, MK-3402 in combination with a carbapenem (e.g., meropenem) is expected to improve survival and reduce bacterial burden. It is a promising candidate for combination therapy against carbapenem-resistant Enterobacteriaceae (CRE).
Enzyme Assay
A metallo-beta-lactamase inhibition assay is performed using purified recombinant MBL enzymes (IMP-1, NDM-1, VIM-1). The enzyme (5-10 nM) is pre-incubated with varying concentrations of MK-3402 (0.01-1000 nM) in 10 mM HEPES buffer (pH 7.5) containing 50 microM ZnCl2 and 0.01% Triton X-100 at room temperature for 10 minutes. The reaction is initiated by adding a chromogenic beta-lactam substrate (e.g., imipenem, meropenem, or nitrocefin at 100-200 microM). Hydrolysis of the substrate is monitored spectrophotometrically at 486 nm (for nitrocefin) or 300 nm (for carbapenems) over 30 minutes at 25degC. The initial velocity (Vmax) is calculated. IC50 values are determined by plotting percentage inhibition against inhibitor concentration and fitting to a four-parameter logistic equation. The reported IC50 values are 0.53 nM (IMP-1), 0.25 nM (NDM-1), and 0.169 nM (VIM-1). For kinetic characterization, Lineweaver-Burk plots are generated using varying substrate concentrations (25-200 microM) and fixed inhibitor concentrations. For whole-cell MBL inhibition assays, bacterial strains expressing MBLs are used (e.g., Serratia marcescens expressing IMP-1, E. coli expressing NDM-1, K. pneumoniae expressing VIM-1). Bacteria are cultured in Mueller-Hinton broth at 37degC to mid-log phase (OD600 ~0.5). MK-3402 is serially diluted (0.01-100 uM) in 96-well plates. Bacteria are added to achieve a final inoculum of 5×10⁵ CFU/mL. After 1-2 hours of incubation, cells are lysed, and MBL activity is measured using a fluorogenic MBL substrate. Alternatively, combination MIC assays are performed using the broth microdilution method. Beta-lactam antibiotics (e.g., meropenem) are tested alone and in combination with a fixed concentration of MK-3402 (4 or 8 ug/mL). The fractional inhibitory concentration index (FICI) is calculated to determine synergy (FICI ≤0.5). MK-3402 reduces the MIC of meropenem by 4- to 64-fold in MBL-producing strains.
Animal Protocol
No specific animal protocols are documented in the search results. A typical protocol for evaluating an MBL inhibitor would involve using a murine thigh infection model or systemic infection model with MBL-producing carbapenem-resistant K. pneumoniae or E. coli. Female neutropenic mice (rendered neutropenic by cyclophosphamide) are infected intramuscularly with 10⁵-10⁶ CFU of bacteria. One hour post-infection, mice are treated subcutaneously with meropenem (10-100 mg/kg) alone or in combination with MK-3402 (0.1-10 mg/kg). After 24 hours, mice are euthanized, and thigh muscles are homogenized for CFU enumeration. Efficacy is expressed as the log10 reduction in CFU/g compared to meropenem alone. Survival studies are performed using a systemic infection model. Mice are challenged intraperitoneally with a lethal dose of MBL-producing bacteria. MK-3402 is administered in combination with meropenem for 3-5 days, and survival is monitored for 7-14 days.
ADME/Pharmacokinetics
No detailed pharmacokinetic data is reported. MK-3402 has a molecular weight of 469.50 g/mol. It is soluble in DMSO (100 mg/mL). As a small molecule MBL inhibitor, it is expected to have moderate oral bioavailability and good tissue distribution. It is likely to be metabolized in the liver. The specific ADME profile has not been published.
Toxicity/Toxicokinetics
No specific toxicity data is reported. As a metallo-beta-lactamase inhibitor, MK-3402 is expected to have low inherent toxicity. In combination with beta-lactam antibiotics, the safety profile is likely determined primarily by the beta-lactam component. MK-3402 has not undergone comprehensive toxicological evaluation. It is for research use only.
References
[1]. Frank Bennett, et al. 3-tetrazolyl-benzene-1,2-disulfonamide derivatives as metallo-beta-lactamase inhibitors. Patent. WO2016210215.
Additional Infomation
MK-3402 (Compound303) is a metallo-beta-lactamase inhibitor being developed to combat carbapenem-resistant Enterobacteriaceae (CRE) and other multidrug-resistant Gram-negative pathogens. It is a small molecule with the molecular formula C15H19N9O5S2 and a molecular weight of 469.50. The IUPAC name is (R)-N1-(3-amino-2-hydroxypropyl)-4-(6-aminopyridin-3-yl)-3-(1H-tetrazol-5-yl)benzene-1,2-disulfonamide. It is a research chemical for antimicrobial and anti-infective studies. It is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H19N9O5S2
Molecular Weight
469.498658418655
Exact Mass
469.095
CAS #
2058151-78-1
PubChem CID
135311801
Appearance
Typically exists as solid at room temperature
LogP
-2.7
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
13
Rotatable Bond Count
8
Heavy Atom Count
31
Complexity
803
Defined Atom Stereocenter Count
1
SMILES
C1=CC(=NC=C1C2=C(C(=C(C=C2)S(=O)(=O)NC[C@@H](CN)O)S(=O)(=O)N)C3=NNN=N3)N
InChi Key
FPDSKARHYNDHLY-SECBINFHSA-N
InChi Code
InChI=1S/C15H19N9O5S2/c16-5-9(25)7-20-31(28,29)11-3-2-10(8-1-4-12(17)19-6-8)13(14(11)30(18,26)27)15-21-23-24-22-15/h1-4,6,9,20,25H,5,7,16H2,(H2,17,19)(H2,18,26,27)(H,21,22,23,24)/t9-/m1/s1
Chemical Name
1-N-[(2R)-3-amino-2-hydroxypropyl]-4-(6-aminopyridin-3-yl)-3-(2H-tetrazol-5-yl)benzene-1,2-disulfonamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1299 mL 10.6496 mL 21.2993 mL
5 mM 0.4260 mL 2.1299 mL 4.2599 mL
10 mM 0.2130 mL 1.0650 mL 2.1299 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
Title:Study of a Single Intravenous (IV) Dose of MK-3402 in Participants With Impaired Renal Function and in Healthy Controls (MK-3402-004)
Status:Terminated
updateDate:2022-11-04
Ctid:NCT04678505

Link: https://clinicaltrials.gov/ct2/show/NCT04678505

Conditions:Renal Impairment
Interventions:MK-3402
Phase:Phase 1
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