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Fmoc-aminooxy-PEG2-NH2

Cat No.:V56379 Purity: ≥98%
Fmoc-aminooxy-PEG2-NH2 is a cleavable (degradable) ADC (Antibody-drug conjugate) linker that may be utilized to prepare antibody-conjugated active molecules (ADC).
Fmoc-aminooxy-PEG2-NH2
Fmoc-aminooxy-PEG2-NH2 Chemical Structure CAS No.: 190249-87-7
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
250mg
1g
Other Sizes
Official Supplier of:
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Product Description
Fmoc-aminooxy-PEG2-NH2 is a cleavable (degradable) ADC (Antibody-drug conjugate) linker that may be utilized to prepare antibody-conjugated active molecules (ADC).
Fmoc-aminooxy-PEG2-NH2 is a heterobifunctional, cleavable linker (a PEG-based spacer) used in the synthesis of antibody-drug conjugates (ADCs). It features an Fmoc-protected aminooxy group at one end and a free primary amine at the other, connected by a two-unit polyethylene glycol (PEG2) spacer.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable. This compound is a chemical linker for bioconjugation, not a drug. It does not have a biological target. Its purpose is to attach a therapeutic payload (e.g., a toxin) to an antibody. The aminooxy group targets and forms a stable oxime bond with aldehyde- or ketone-modified payloads, while the amine can be further conjugated to a modified antibody. The PEG2 spacer enhances solubility and reduces steric hindrance.
ln Vitro
An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC.
No significant direct in vitro activity reported. The compound is biologically inert. Its value is in enabling the synthesis of ADCs. The resulting ADC conjugates can demonstrate potent in vitro activity, killing targeted cancer cells with high specificity. The cleavable nature allows for efficient payload release in the target cell. The purity of the linker is typically ≥95% for successful conjugation.
ln Vivo
No specific in vivo data reported. As a linker, it is not studied directly in vivo. However, ADCs synthesized using this Fmoc-aminooxy-PEG2-NH2 linker can show strong in vivo efficacy in tumor xenograft models. The PEG spacer can help improve the pharmacokinetics (e.g., reduce aggregation, increase circulation time) of the ADC compared to non-PEGylated linkers.
Enzyme Assay
Not applicable. This is a chemical reagent used for bioconjugation. A typical conjugation protocol involves first deprotecting the Fmoc group of Fmoc-aminooxy-PEG2-NH2 using 20% piperidine in DMF. The resulting free aminooxy group can then react with a drug molecule containing a ketone or aldehyde group in a mildly acidic buffer (pH 4-5) to form a stable oxime linkage. The final drug-linker conjugate can then be purified and coupled to an antibody.
Cell Assay
Not applicable. The compound itself is not used in cell-based assays. However, the fully conjugated and purified ADC can be tested. Target-positive and target-negative cancer cells are seeded in 96-well plates at 5,000 cells/well. Cells are treated with serial dilutions of the ADC (1 pM to 100 nM) for 72-96 hours. Cell viability is measured by a luminescent CellTiter-Glo assay. The assay must be performed with both cell lines to calculate the specific cytotoxicity and selectivity index of the ADC.
Animal Protocol
No specific in vivo animal study protocols are documented for the linker itself. For an ADC synthesized with it, a typical protocol would involve establishing subcutaneous tumor xenografts of target-positive cancer cells (e.g., CD30-positive Karpas 299 cells) in 6-8 week old female SCID mice. Once tumors are established, the ADC would be administered intravenously at a single dose or weekly for 2-3 cycles at 1-10 mg/kg. Tumor growth inhibition and survival would be monitored. The linker's stability in circulation is a key endpoint, assessed by LC-MS analysis of plasma samples.
ADME/Pharmacokinetics
Not applicable for the linker. The PEG2 spacer is known to impart favorable properties on the final ADC. The PEGylation helps increase the ADC's solubility, reduce aggregation, and prevent non-specific uptake by phagocytes. This leads to a longer plasma half-life and a larger area under the curve (AUC) for the ADC compared to non-PEGylated conjugates.
Toxicity/Toxicokinetics
No toxicity data reported. Fmoc-aminooxy-PEG2-NH2 is a chemical reagent. Standard chemical safety precautions apply, including the use of PPE (gloves, goggles) and a fume hood. Avoid inhalation and skin contact. The linker itself is not toxic, but the final ADC payload (e.g., auristatin, maytansinoid) is highly potent and must be handled with extreme caution in a qualified biosafety level 2 (BSL-2) or chemical safety facility.
References
[1]. Siekmann J, et, al. Materials and methods for conjugating a water soluble fatty acid derivative to a protein. US20120190096A1.
Additional Infomation
This is a cleavable ADC linker. The Fmoc protecting group is base-labile. The aminooxy group is highly reactive for chemoselective conjugation. The PEG2 spacer has the exact formula of -O-CH2-CH2-O-CH2-CH2-, which increases hydrophilicity. The compound is also used in proteomics for capturing glycopeptides. It is a specialty chemical for advanced bioconjugation research. Not for therapeutic use. Molecular formula: C19H22N2O5; molecular weight: 358.39.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H22N2O5
Molecular Weight
358.39
Exact Mass
358.152
CAS #
190249-87-7
PubChem CID
88541230
Appearance
Typically exists as solid at room temperature
LogP
2.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
10
Heavy Atom Count
26
Complexity
414
Defined Atom Stereocenter Count
0
SMILES
C1=CC=C2C(=C1)C(C3=CC=CC=C32)COC(=O)NOCCOCCON
InChi Key
PJENKAHPGFOITB-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H22N2O5/c20-25-11-9-23-10-12-26-21-19(22)24-13-18-16-7-3-1-5-14(16)15-6-2-4-8-17(15)18/h1-8,18H,9-13,20H2,(H,21,22)
Chemical Name
9H-fluoren-9-ylmethyl N-[2-(2-aminooxyethoxy)ethoxy]carbamate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7903 mL 13.9513 mL 27.9026 mL
5 mM 0.5581 mL 2.7903 mL 5.5805 mL
10 mM 0.2790 mL 1.3951 mL 2.7903 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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