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DBCO-PEG2-DBCO

Cat No.:V54506 Purity: ≥98%
DBCO-PEG2-DBCO is a reagent for click chemistry containing a DBCO group and a PEG linker containing two terminal DBCO groups.
DBCO-PEG2-DBCO
DBCO-PEG2-DBCO Chemical Structure CAS No.: 2639395-48-3
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
50mg
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Product Description
DBCO-PEG2-DBCO is a reagent for click chemistry containing a DBCO group and a PEG linker containing two terminal DBCO groups. The DBCO group is widely used in copper-free click chemistry reactions due to its strain-promoting high energy. Hydrophilic polyethylene glycol chains allow increased water solubility. T Reagent grade, for research use only.
DBCO-PEG2-DBCO is a click chemistry reagent consisting of a polyethylene glycol (PEG) linker flanked by two terminal dibenzocyclooctyne (DBCO) groups. It is used as a versatile ADC linker for copper-free click chemistry in antibody-drug conjugate development, enhancing targeted drug delivery and stability. The PEG spacer increases water solubility.
Biological Activity I Assay Protocols (From Reference)
Targets
Not applicable. DBCO-PEG2-DBCO is a chemical linker for bioconjugation, not a drug. It has no biological target. The DBCO groups are designed for copper-free click chemistry, specifically for strain-promoted alkyne-azide cycloaddition (SPAAC) reactions. These DBCO groups react rapidly and selectively with azide-functionalized molecules (e.g., payloads, antibodies, or fluorescent probes) without the need for toxic copper catalysts. The PEG2 spacer (two ethylene glycol units) increases water solubility and reduces steric hindrance.
ln Vitro
As a bioconjugation linker, DBCO-PEG2-DBCO has no direct biological activity. Its value is in enabling the efficient and specific conjugation of antibody-drug conjugates via copper-free click chemistry. The high strain energy of the DBCO groups promotes rapid reaction rates and high yields, while the PEG spacer improves water solubility, making it ideal for diverse research applications.
ln Vivo
No specific in vivo data is reported. As a linker, it is not studied directly in vivo. However, ADCs synthesized using DBCO-PEG2-DBCO demonstrate improved stability and efficacy in tumor xenograft models. The copper-free click chemistry conjugation method avoids the potential toxicity of copper catalysts, making it suitable for in vivo applications.
Enzyme Assay
Not applicable. DBCO-PEG2-DBCO is a chemical reagent. A typical conjugation protocol involves dissolving the linker (1-5 mM) in anhydrous DMSO or DMF. To conjugate an azide-functionalized payload, the linker and the azide are mixed in a 1:1 to 1:3 molar ratio in PBS (pH 7.2-7.4) containing 5-10% organic co-solvent. The reaction is incubated at room temperature for 2-6 hours, and conversion is monitored by LC-MS or TLC. The product is purified by preparative HPLC or size exclusion chromatography.
Cell Assay
Not applicable. The compound is not used in cell-based assays. However, the fully synthesized ADC or labeled antibody can be tested in vitro. Target-positive cancer cells are seeded in 96-well plates and treated with the ADC or labeled antibody. For ADCs, cell viability is measured by CellTiter-Glo. For imaging applications, the DBCO-PEG2-DBCO linker can be used to conjugate azide-labeled antibodies to fluorescent dyes, and cell binding is assessed by flow cytometry or fluorescence microscopy.
Animal Protocol
No specific in vivo animal study protocols are documented for DBCO-PEG2-DBCO itself. For an ADC synthesized with this linker, a typical protocol involves intravenous administration of the ADC (1-10 mg/kg) in immunodeficient mice bearing tumor xenografts of target-positive cancer cells. Efficacy is assessed by tumor volume measurement and survival analysis. PK studies measure ADC concentration in plasma and tissues by ELISA or LC-MS.
ADME/Pharmacokinetics
Not applicable for the linker. The PEG2 spacer in DBCO-PEG2-DBCO imparts favorable properties to the final conjugate. The hydrophilic PEG chain reduces non-specific protein binding, improves solubility, and can increase the circulation half-life of the conjugated product. The small PEG2 size minimizes steric interference with the antibody's antigen binding.
Toxicity/Toxicokinetics
No toxicity data is reported. DBCO-PEG2-DBCO is a chemical reagent. The DBCO groups are reactive and may form adducts with biological nucleophiles; therefore, it should be handled with care. Standard chemical safety precautions apply. The compound is for research use only, not for human therapeutic use.
References
[1]. Jiang X, et al. Recent applications of click chemistry in drug discovery. Expert Opin Drug Discov. 2019 Aug;14(8):779-789.
Additional Infomation
DBCO-PEG2-DBCO has the molecular formula C44H42N4O6 and a molecular weight of 722.83 g/mol. The DBCO (dibenzocyclooctyne) group enables strain-promoted alkyne-azide cycloaddition (SPAAC) copper-free click chemistry, which is a bioorthogonal reaction that does not interfere with biological systems. The linker is soluble in DMSO, DMF, and other organic solvents. It is stored as a powder at -20degC and is stable for up to 3 years.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C44H42N4O6
Exact Mass
722.31
CAS #
2639395-48-3
PubChem CID
155887591
Appearance
White to yellow solid powder
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
15
Heavy Atom Count
54
Complexity
1320
Defined Atom Stereocenter Count
0
SMILES
C1C2=CC=CC=C2C#CC3=CC=CC=C3N1C(=O)CCC(=O)NCCOCCOCCNC(=O)CCC(=O)N4CC5=CC=CC=C5C#CC6=CC=CC=C64
InChi Key
GPRBYNSGOSAHPU-UHFFFAOYSA-N
InChi Code
InChI=1S/C44H42N4O6/c49-41(21-23-43(51)47-31-37-13-3-1-9-33(37)17-19-35-11-5-7-15-39(35)47)45-25-27-53-29-30-54-28-26-46-42(50)22-24-44(52)48-32-38-14-4-2-10-34(38)18-20-36-12-6-8-16-40(36)48/h1-16H,21-32H2,(H,45,49)(H,46,50)
Chemical Name
4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-N-[2-[2-[2-[[4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-4-oxobutanoyl]amino]ethoxy]ethoxy]ethyl]-4-oxobutanamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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