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ClpB-IN-1

Cat No.:V53263 Purity: ≥98%
ClpB-IN-1 (compound 7) is a potent ClpB inhibitor.
ClpB-IN-1
ClpB-IN-1 Chemical Structure CAS No.: 1453172-23-0
Product category: Bacterial
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
100mg
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Product Description
ClpB-IN-1 (compound 7) is a potent ClpB inhibitor. ClpB-IN-1 is a potential antimicrobial agent.
ClpB-IN-1 (compound 7) is a potent inhibitor of the bacterial protein ClpB, which is a member of the Hsp100/Clp family of molecular chaperones involved in protein disaggregation and thermotolerance. ClpB-IN-1 is a potential antimicrobial agent with antibacterial properties. The compound is a small molecule with the molecular formula C14H10N2O2S2 and a molecular weight of 302.37. It is used in research to study bacterial protein homeostasis and as a potential antibacterial agent.
Biological Activity I Assay Protocols (From Reference)
Targets
ClpB-IN-1 targets ClpB, a bacterial protein disaggregase that is essential for the survival of certain bacteria under stress conditions. ClpB is involved in the reactivation of aggregated proteins, contributing to bacterial thermotolerance and virulence. By inhibiting ClpB, the compound disrupts protein homeostasis in bacterial cells, leading to growth inhibition and increased susceptibility to environmental stress.
ln Vitro
In vitro activity of ClpB-IN-1 is demonstrated by its potent inhibition of ClpB, making it a potential antimicrobial agent. The compound shows antibacterial activity against susceptible bacterial strains by disrupting protein disaggregation and thermotolerance. Its activity is typically assessed in bacterial growth inhibition assays, where it exhibits concentration-dependent inhibition of bacterial proliferation.
ln Vivo
In vivo activity of ClpB-IN-1 has not been extensively documented. As a potent ClpB inhibitor with antibacterial properties, it has potential for in vivo efficacy in animal models of bacterial infection. However, further in vivo studies are needed to evaluate its pharmacokinetic properties, antibacterial efficacy, and safety profile. The compound is intended for research use only.
Enzyme Assay
In vitro enzyme assays for ClpB-IN-1 involve measuring its inhibition of ClpB ATPase or protein disaggregation activity. The assay typically uses purified recombinant ClpB protein and measures ATP hydrolysis or the reactivation of aggregated substrate proteins in the presence of the compound. IC50 values can be determined from dose-response curves generated in these enzymatic assays.
Cell Assay
In vitro cellular assays for ClpB-IN-1 involve culturing bacterial cells in the presence of varying concentrations of the compound and measuring bacterial growth inhibition using optical density measurements or colony counting. The compound's ability to inhibit ClpB function in cells can be assessed by evaluating bacterial survival under heat stress or other conditions that require ClpB activity.
Animal Protocol
In vivo animal experiments for ClpB-IN-1 are not extensively documented. If used in animal models of bacterial infection, typical protocols would involve administering the compound to infected animals and evaluating efficacy by measuring bacterial load in tissues or survival rates. The compound's pharmacokinetic properties and therapeutic potential would be assessed in these studies.
ADME/Pharmacokinetics
Pharmacokinetic data for ClpB-IN-1 are limited. The compound has a molecular weight of 302.37 and a molecular formula of C14H10N2O2S2. It is soluble in DMSO at 4.5 mg/mL (14.88 mM) with sonication and heating to 60°C. Powder should be stored at -20°C for up to 3 years, and solutions at -80°C for up to 1 year. Its absorption, distribution, metabolism, and excretion properties have not been characterized.
Toxicity/Toxicokinetics
Toxicological data for ClpB-IN-1 are limited. As a research compound, comprehensive toxicological studies have not been reported. The compound is intended for research use only and is not for human therapeutic application. Standard laboratory safety precautions should be followed when handling this compound.
References
[1]. Martin I, et, al. Screening and evaluation of small organic molecules as ClpB inhibitors and potential antimicrobials. J Med Chem. 2013 Sep 26;56(18):7177-89.
Additional Infomation
ClpB-IN-1 (CAS#: 1453172-23-0) has the molecular formula C14H10N2O2S2 and a molecular weight of 302.37. Its SMILES is C=CCN1C(=S)S\C(C1=O)=C1/C(=O)Nc2ccccc12. The compound is a potent ClpB inhibitor and potential antimicrobial agent used in antibacterial research. It is for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Exact Mass
302.018
CAS #
1453172-23-0
PubChem CID
1370080
Appearance
Brown to reddish brown solid powder
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
3
Heavy Atom Count
20
Complexity
696
Defined Atom Stereocenter Count
0
SMILES
C=CCN1C(=C(SC1=S)C2=C3C=CC=CC3=NC2=O)O
InChi Key
GXJJIBDJRDXPGU-UHFFFAOYSA-N
InChi Code
InChI=1S/C14H10N2O2S2/c1-2-7-16-13(18)11(20-14(16)19)10-8-5-3-4-6-9(8)15-12(10)17/h2-6,18H,1,7H2
Chemical Name
3-(4-hydroxy-3-prop-2-enyl-2-sulfanylidene-1,3-thiazol-5-yl)indol-2-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : 5 mg/mL (16.54 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 5 in the Volume box and choose the correct unit (mL)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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