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Anticancer agent 129

Alias: Anticancer agent 129; Anticancer agent-129; Anticancer agent129
anti-cancer compound 129 (Compound 3a), a quinoline analogue with predicted anti-cancer effect.
Anticancer agent 129
Anticancer agent 129 Chemical Structure CAS No.: 135882-37-0
Product category: Others 11
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
anti-cancer compound 129 (Compound 3a), a quinoline analogue with predicted anti-cancer effect.
Anticancer agent 129 (Compound 3a) is a quinoline derivative identified through computational methods, specifically Comparative Molecular Field Analysis (CoMFA) and Comparative Molecular Similarity Indices Analysis (CoMSIA), as a potential anticancer agent. It is a research compound.
Biological Activity I Assay Protocols (From Reference)
Targets
Not defined; it is a drug derivative. The specific molecular target of Anticancer agent 129 has not been identified experimentally. It is a quinoline analog predicted to have anti-cancer activity through in silico modeling. It is believed to interact with targets such as topoisomerases or kinases, or act as an intercalating agent, which are common mechanisms for quinoline-based anticancer agents. It may also be a derivative of known anticancer drugs like camptothecin or irinotecan, which are topoisomerase I inhibitors.
ln Vitro
Anticancer agent 129 has predicted anti-cancer activity based on computational models (CoMFA and CoMSIA). No specific, experimentally determined in vitro activity (e.g., IC50 values against specific cancer cell lines) is provided in the search results. It is a quinoline derivative, and many such compounds are known to possess cytotoxic activity by intercalating into DNA or inhibiting key enzymes like topoisomerases.
ln Vivo
No specific in vivo activity data has been reported. As a computationally designed anticancer agent, it would need to be validated in animal models. If active in vitro, it would be studied in standard tumor xenograft models, such as murine models of colon or breast cancer, to assess its ability to inhibit tumor growth.
Enzyme Assay
Not applicable, as the target is unknown. A typical protocol for assessing DNA intercalation, a common property of quinolines, involves a cell-free DNA binding assay. A solution of calf thymus DNA (CT-DNA, 100 uM) in Tris buffer (pH 7.4) is titrated with increasing concentrations of Anticancer agent 129 (0.1-100 uM). The absorption spectrum is recorded from 200-500 nm. A red shift (bathochromic shift) and a decrease in absorbance (hypochromic effect) indicate intercalation into the DNA base pairs. Alternatively, a competitive displacement assay using a DNA-bound fluorescent dye (e.g., ethidium bromide) can be performed. A decrease in fluorescence indicates that the test compound is displacing the dye by binding to DNA.
Cell Assay
For in vitro cellular studies, a panel of human cancer cell lines (e.g., HeLa for cervical, MCF-7 for breast, A549 for lung) are seeded in 96-well plates (5×103 cells/well). After 24 hours, cells are treated with Anticancer agent 129 at concentrations ranging from 0.1-100 uM for 48-72 hours. Cell viability is assessed using the MTT or CellTiter-Glo assay. The GI50 (concentration to inhibit cell growth by 50%) is calculated. To confirm the mechanism, cells are treated for 24 hours, and DNA damage is assessed by the alkaline comet assay (single-cell gel electrophoresis) or by measuring the phosphorylation of histone H2AX (gammaH2AX) by Western blotting. Apoptosis is measured by caspase 3/7 activity or Annexin V-FITC staining by flow cytometry.
Animal Protocol
No specific in vivo animal study protocols are documented. For a compound with promising in vitro anticancer activity, a typical protocol would involve establishing subcutaneous tumor xenografts of a cancer cell line (e.g., HCT-116 colon cancer) in 6-8 week old female BALB/c nude mice. Once tumors are established (100-200 mm3), Anticancer agent 129 would be administered intraperitoneally (i.p.) or intravenously (i.v.) at doses of 10-50 mg/kg, daily or every other day for 2-3 weeks. Tumor volume is measured with calipers twice weekly. At the end of the study, tumors are excised, weighed, and analyzed for proliferation (Ki67) and apoptosis (cleaved caspase-3, TUNEL assay). Body weight is monitored for signs of toxicity.
ADME/Pharmacokinetics
No pharmacokinetic data has been reported. As a small molecule with a molecular weight of 275.35 g/mol and a quinoline core (a structure known to be orally bioavailable), Anticancer agent 129 has the potential for good oral absorption. However, its specific ADME properties have not been published, as it is primarily an in silico-derived research candidate awaiting experimental validation.
Toxicity/Toxicokinetics
No specific toxicity data has been reported. As a potential topoisomerase inhibitor or DNA intercalator, which are common mechanisms for quinoline-based anticancer agents, the toxicity profile would likely include bone marrow suppression (myelosuppression) and gastrointestinal side effects, which are common to this class of chemotherapy drugs (e.g., irinotecan). However, this is purely speculation. The compound is for research use only.
Additional Infomation
Anticancer agent 129 is also known as Compound 3a, a quinoline derivative. The compound is a result of a computational drug design campaign and is intended to be used in subsequent in vitro and in vivo validation studies. This compound is part of a series of CoMFA/CoMSIA-optimized quinolines. It is not approved for clinical use. Molecular formula: C18H17N3; molecular weight: 275.35 g/mol.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H17N3
Molecular Weight
275.36
Exact Mass
275.142
Elemental Analysis
C, 78.52; H, 6.22; N, 15.26
CAS #
135882-37-0
PubChem CID
711989
Appearance
Off-white to light yellow solid powder
Density
1.3±0.1 g/cm3
Boiling Point
536.3±50.0 °C at 760 mmHg
Flash Point
278.1±30.1 °C
Vapour Pressure
0.0±1.4 mmHg at 25°C
Index of Refraction
1.729
LogP
3.85
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
2
Heavy Atom Count
21
Complexity
352
Defined Atom Stereocenter Count
0
SMILES
C1CN(C2=NC3=CC=CC=C3C(=C21)N)CC4=CC=CC=C4
InChi Key
ZCZQCKJQIGWLFR-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H17N3/c19-17-14-8-4-5-9-16(14)20-18-15(17)10-11-21(18)12-13-6-2-1-3-7-13/h1-9H,10-12H2,(H2,19,20)
Chemical Name
1-benzyl-2,3-dihydro-1H-pyrrolo[2,3-b]quinolin-4-amine
Synonyms
Anticancer agent 129; Anticancer agent-129; Anticancer agent129
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~453.97 mM)
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.6316 mL 18.1580 mL 36.3161 mL
5 mM 0.7263 mL 3.6316 mL 7.2632 mL
10 mM 0.3632 mL 1.8158 mL 3.6316 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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