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5α-Cholestane-d6

Cat No.:V48684 Purity: ≥98%
5α-Cholestane-d6 is the deuterium labelled form of 5α-Cholestane.
5α-Cholestane-d6
5α-Cholestane-d6 Chemical Structure CAS No.: 358731-18-7
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
Other Sizes
Official Supplier of:
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Product Description
5α-Cholestane-d6 is the deuterium labelled form of 5α-Cholestane.
5alpha-Cholestane-d6 (358731-18-7) is the deuterium-labeled form of 5alpha-Cholestane, a saturated hydrocarbon skeleton derived from cholesterol. With six hydrogen atoms replaced by deuterium, it is used as an internal standard for the quantification of cholesterol and other sterols in biological samples by GC-MS or LC-MS, aiding in studies of cholesterol metabolism and sterol biosynthesis.
Biological Activity I Assay Protocols (From Reference)
Targets
Target: Isotope-Labeled Compounds / Endogenous Metabolite. 5alpha-Cholestane is a saturated steroidal hydrocarbon with a perhydrocyclopentanophenanthrene skeleton. It is a non-polar reference compound used in steroid chemistry. 5alpha-Cholestane is a precursor in the synthesis of brassinosteroids, plant hormones that regulate growth and development.
ln Vitro
Drug compounds have included stable heavy isotopes of carbon, hydrogen, and other elements, mostly as quantitative tracers while the drugs were being developed. Because deuteration may have an effect on a drug's pharmacokinetics and metabolic properties, it is a cause for concern [1].
In vitro, stable heavy isotopes of hydrogen, carbon, and other elements have been incorporated into drug molecules, largely as tracers for quantitation during the drug development process. No specific biological activity is reported for the labeled form. As an internal standard, it is chemically inert and does not bind to biological receptors.
ln Vivo
In vivo, the labeled standard is not administered to animals for efficacy studies. The unlabeled 5alpha-Cholestane is a biologically inactive compound used solely as an analytical reference. Cholesterol, the precursor of 5alpha-Cholestane, is essential for membrane structure and steroid hormone synthesis, but the saturated hydrocarbon itself has no known biological activity.
Enzyme Assay
For cell-free assay: plasma, serum, or tissue homogenates are saponified to release sterols, followed by lipid extraction (Folch method). The extracts are derivatized (e.g., to trimethylsilyl (TMS) ethers) and analyzed by GC-MS. 5alpha-Cholestane-d6 is spiked into the samples as an internal standard prior to processing to correct for losses during extraction and derivatization and to provide a stable reference for quantitation of cholesterol and other sterols.
Cell Assay
No cell-based assays are performed with the labeled standard. The unlabeled 5alpha-Cholestane is not used in cell culture because it is a highly hydrophobic hydrocarbon that is not metabolized or incorporated into biological membranes. It is purely an analytical reference compound for sterol analysis, not a cell-penetrating active molecule.
Animal Protocol
No animal studies are conducted with the labeled internal standard itself. For cholesterol metabolism studies, animals are fed a normal or high-cholesterol diet, and tissues (liver, plasma, aorta) are collected. 5alpha-Cholestane-d6 is added as an internal standard during sample processing for GC-MS analysis to quantify cholesterol and its metabolites, but the compound itself is not administered to the animals.
ADME/Pharmacokinetics
PK properties are not reported for 5alpha-Cholestane-d6, as it is not a drug and is not absorbed or metabolized in a pharmacological sense. The compound is used as an external standard for the quantitative analysis of cholesterol. It is chemically stable and does not undergo metabolism when used as an internal standard in processed biological samples. Its XLogP3 is 11.1, indicating extreme hydrophobicity.
Toxicity/Toxicokinetics
No toxicity data are available for this specific compound. 5alpha-Cholestane is considered to have low acute toxicity because it is poorly absorbed and is not biologically active. The deuterated standard is for research use only and is not intended for human consumption. The compound is stable if stored under recommended conditions (room temperature, dry). Non-hazardous for transport.
References

[1]. Impact of Deuterium Substitution on the Pharmacokinetics of Pharmaceuticals. Ann Pharmacother. 2019;53(2):211-216.

Additional Infomation
C27-steroid is a C27 steroid.
See also: cholesterane (note moved to); coprosterane (note moved to).
5alpha-Cholestane-d6 is a research standard, not a drug. It is not FDA-approved for clinical use. It is used as an internal standard for cholesterol quantification in clinical diagnostics, lipidomics, and nutritional research. The unlabeled 5alpha-Cholestane is used in the synthesis of brassinosteroids for agricultural research. The labeled compound is essential for stable isotope dilution assays in mass spectrometry.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H42D6
Molecular Weight
378.71
Exact Mass
378.413
CAS #
358731-18-7
PubChem CID
10202
Appearance
White to off-white solid powder
LogP
8.497
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
0
Rotatable Bond Count
5
Heavy Atom Count
27
Complexity
506
Defined Atom Stereocenter Count
0
InChi Key
XIIAYQZJNBULGD-UHFFFAOYSA-N
InChi Code
InChI=1S/C27H48/c1-19(2)9-8-10-20(3)23-14-15-24-22-13-12-21-11-6-7-17-26(21,4)25(22)16-18-27(23,24)5/h19-25H,6-18H2,1-5H3
Chemical Name
10,13-dimethyl-17-(6-methylheptan-2-yl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6405 mL 13.2027 mL 26.4054 mL
5 mM 0.5281 mL 2.6405 mL 5.2811 mL
10 mM 0.2641 mL 1.3203 mL 2.6405 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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